• структурно-функциональная организация хромосом
• кластерная организация генов
• молекулярная организация гетерохроматина животных и растений
• разработка системы для внесения направленных модификаций в геном
• организация и эволюция хромосом и геномов позвоночных
• палеогеномика
• структура добавочных хромосом
• хромосомные системы определения пола
• функциональный и эволюционный анализ геномной компоненты иммунной системы

ПУБЛИКАЦИИ: 

2020

1. Du K, … Prokopov D, Makunin A, Kichigin I, … Trifonov V, … Schartl M. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. (doi: 10.1038/s41559-020-1166-x) Nat Ecol Evol 4: 841–852, 2020
   (IF = 10.965)

2. Yang C, Li F, Xiong Z, Koepfli K-P, Ryder O, Perelman P, Li Q, Zhang G. A draft genome assembly of spotted hyena, Crocuta crocuta. (doi: 10.1038/s41597-020-0468-9) Sci Data 7: 126, 2020
   (IF = 5.929)

3. Kolesnikova TD, Kolodyazhnaya AV, Pokholkova GV, Schubert V, Dovgan VV, Romanenko SA, Prokopov DYu, Zhimulev IF. Effects of mutations in the Drosophila melanogaster Rif1 gene on the replication and underreplication of pericentromeric heterochromatin in salivary gland polytene chromosomes. (doi: 10.3390/cells9061501) Cells 9(6): 1501, 2020 
   (IF = 5.656)

4. Romanenko SA, Smorkatcheva AV, Kovalskaya YM, Prokopov DY, Lemskaya NA, Gladkikh OL, Polikarpov IA, Serdyukova NA, Trifonov VA, Molodtseva AS, O’Brien PCM, Golenishchev FN, Ferguson-Smith MA, Graphodatsky AS. Complex structure of Lasiopodomys mandarinus vinogradovi sex chromosomes, sex determination, and intraspecific autosomal polymorphism.(doi: 10.3390/genes11040374) Genes 11(4): 374, 2020
   (IF = 3.331)

5. Khoroshko VA, Pokholkova GV, Levitsky VG, Zykova TY, Antonenko OV, Belyaeva ES, Zhimulev IF. Genes containing long introns occupy series of bands and interbands in Drosophila melanogaster polytene chromosomes. (doi: 10.3390/genes11040417) Genes 11(4): 417, 2020
   (IF = 3.331)

6. Biltueva LS, Prokopov DY, Romanenko SA, Interesova EA, Schartl M, Trifonov VA. Chromosome distribution of highly conserved tandemly arranged repetitive DNAs in the Siberian sturgeon (Acipenser baerii). (doi: 10.3390/genes11111375) Genes 11(11): 1375, 2020
   (IF = 3.331)

7. Ogienko AA, Andreyeva EN, Omelina ES, Oshchepkova AL, Pindyurin AV. Molecular and cytological analysis of widely-used Gal4 driver lines for Drosophila neurobiology. (doi: 10.1186/s12863-020-00895-7) BMC Genetics 21: 96, 2020
   (IF = 2.567)

8. Smagina AS, Kulemzin SV, Yusubalieva GM, Kedrova AG, Sanzharov AE, Ivanov YV, Matvienko DA, Kalsin VA, Gorchakov AA, Baklaushev VP, Taranin AV. VAV1‐overexpressing YT cells display improved cytotoxicity against malignant cells. Biotechnol Appl Biochem, 2020, doi: 10.1002/bab.2001
   (IF = 1.638)

9. Lisachov AP, Giovannotti M, Pereira JC, Andreyushkova DA, Romanenko SA, Ferguson-Smith MA, Borodin PM, Trifonov VA. Chromosome painting does not support a sex chromosome turnover in Lacerta agilis Linnaeus, 1758. (doi: 10.1159/000506321) Cytogenet Genome Res 160: 134-140, 2020
   (IF = 1.423)

10. Лукьянов СА, Сергийко СВ, Титов СЕ, Решетов ИВ, Веряскина ЮА, Важенин АВ, Гостимский АВ, Ипполитов ЛИ, Рогова МО. Стратификация риска рецидива папиллярного рака щитовидной железы на основании результатов молекулярно-генетических исследований. (doi: 10.17650/2222-1468-2020-10-1-93-100) Опухоли головы и шеи 10(1): 93-100, 2020

2019

1. Gorchakov AA, Kulemzin SV, Kochneva GV, Taranin AV. Challenges and prospects of chimeric antigen receptor T-cell therapy for metastatic prostate cancer. (doi: 10.1016/j.eururo.2019.08.014) Eur Urol 77(3): 299-308, 2020 
   (IF = 17.298)

2. Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman P, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM. Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks.  (doi: 10.1101/gr.239863.118) Genome Res 29(4): 576-589, 2019
   (IF = 9.944)

3. Elbers JP, Rogers MF, Perelman PL, Proskuryakova AA, Serdyukova NA, Johnson WE, Horin P, Corander J, Murphy D, Burger PA. Improving Illumina assemblies with Hi‐C and long reads: an example with the North African dromedary. (doi: 10.1111/1755-0998.13020) Mol Ecol Resour 19(4): 1015-1026, 2019
   (IF = 7.049)

4. Kosova AA, Kutuzov MM, Evdokimov AN, Ilina ES, Belousova EA, Romanenko SA, Trifonov VA, Khodyreva SN, Lavrik OI. Poly(ADP-ribosyl)ation and DNA repair synthesis in the extracts of naked mole rat, mouse, and human cells. (doi: 10.18632/aging.101959) Aging 11(9): 2852-2873, 2019
   (IF = 5.515)

5. Pavlova GA, Popova JV, Andreyeva EN, Yarinich LA, Lebedev MO, Razuvaeva AV, Dubatolova TD, Oshchepkova AL, Pellacani C, Somma MP, Pindyurin AV, Gatti M. RNAi-mediated depletion of the NSL complex subunits leads to abnormal chromosome segregation and defective centrosome duplication in Drosophila mitosis. (doi: 10.1371/journal.pgen.1008371) PLoS Genet 15(9): e1008371, 2019
   (IF = 5.224)

6. Farré M, Li Q, Darolti I, Zhou Y, Damas J, Proskuryakova AA, Kulemzina AI, Chemnick LG, Kim J, Ryder OA, Ma J, Graphodatsky AS, Zhang G, Larkin DM, Lewin HA. An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi). (doi: 10.1093/gigascience/giz090) GigaScience 8(8): giz090, 2019
   (IF = 4.688)

7. Lewin HA, Graves JAM, Ryder OA, Graphodatsky AS, O'Brien SJ. Precision nomenclature for the new genomics. (doi: 10.1093/gigascience/giz086) GigaScience 8(8): giz086, 2019
   (IF = 4.688)

8. Romanenko SA, Lyapunova EA, Saidov AS, O’Brien PCM, Serdyukova NA, Ferguson-Smith MA, Graphodatsky AS, Bakloushinskaya I. Chromosome translocations as a driver of diversification in mole voles Ellobius (Rodentia, Mammalia). (doi: 10.3390/ijms20184466) Int J Mol Sci 20(18): 4466, 2019
   (IF = 4.183)

9. Guselnikov SV, Taranin AV. Unraveling the LRC evolution in mammals: IGSF1 and A1BG provide the keys. (doi: 10.1093/gbe/evz102) Genome Biol Evol 11(6): 1586-1601, 2019
   (IF = 3.726)

10. Sidorenko DS, Sidorenko IA, Zykova TY, Goncharov FP, Larsson J, Zhimulev IF. Molecular and genetic organization of bands and interbands in the dot chromosome of Drosophila melanogaster. (doi: 10.1007/s00412-019-00703-x) Chromosoma 128(2): 97-117, 2019
    (IF = 3.530)

11. Demakova OV, Demakov SA, Boldyreva LV, Zykova TYu, Levitsky VG, Semeshin VF, Pokholkova GV, Sidorenko DS, Goncharov FP, Belyaeva ES, Zhimulev IF. Faint gray bands in Drosophila melanogaster polytene chromosomes are formed by coding sequences of housekeeping genes. (doi: 10.1007/s00412-019-00728-2) Chromosoma 129(1): 25-44, 2020
    (IF = 3.530)

12. Omelina ES, Ivankin AV, Letiagina AE, Pindyurin AV. Optimized PCR conditions minimizing the formation of chimeric DNA molecules from MPRA plasmid libraries. (doi: 10.1186/s12864-019-5847-2) BMC Genomics 20 (Suppl 7): 536, 2019
    (IF = 3.501)

13. Pavlova GA, Razuvaeva AV, Popova JV, Andreyeva EN, Yarinich LA, Lebedev MO, Pellacani C, Bonaccorsi S, Somma MP, Gatti M, Pindyurin AV. The role of Patronin in Drosophila mitosis. (doi: 10.1186/s12860-019-0189-0) BMC Mol Cell Biol 20 (Suppl 1): 7, 2019
    (IF = 3.485)

14. Proskuryakova AA, Kulemzina AI, Perelman PL, Yudkin DV, Lemskaya NA, Okhlopkov IM, Kirillin EV, Farré M, Larkin DM, Roelke-Parker ME, O’Brien SJ, Bush M, Graphodatsky AS. Comparative chromosome mapping of musk ox and the X chromosome among some bovidae species. (doi: 10.3390/genes10110857) Genes 10(11): 857, 2019
    (IF = 3.331)

15. Volkova EI, Andreyenkova NG, Andreyenkov OV, Sidorenko DS, Zhimulev IF, Demakov SA.  Structural and functional dissection of the 5’ region of the Notch gene in Drosophila melanogaster. (doi: 10.3390/genes10121037) Genes 10(12): 1037, 2019
    (IF = 3.331)

16. Kichigin IG, Lisachov AP, Giovannotti M, Makunin AI, Kabilov MR, O’Brien PCM, Ferguson-Smith MF, Graphodatsky AS, Trifonov VA. First report on B chromosome content in a reptilian species: the case of Anolis carolinensis. (doi: 10.1007/s00438-018-1483-9) Mol Genet Genomics 294(1): 13-21, 2019  
    (IF = 2.879)

17. Kulemzin SV, Matvienko DA, Sabirov AH, Sokratyan AM, Chernikova DS, Belovezhets TN, Chikaev AN, Taranin AV, Gorchakov AA. Design and analysis of stably integratedreporters for inducible transgeneexpression in human T cells and CAR NK-cell lines. (doi: 10.1186/s12920-019-0489-4) BMC Med Genom 12(Suppl 2): 44, 2019
    (IF = 2.568)

18. Andreyeva EN, Ogienko AA, Dubatolova TD, Oshchepkova AL, Kozhevnikova EN, Ivankin AV, Pavlova GA, Kopyl SA, Pindyurin AV. A toolset to study functions of Cytosolic non-specific dipeptidase 2 (CNDP2) using Drosophila as a model organism. (doi: 10.1186/s12863-019-0726-z) BMC Genetics 20(Suppl 1): 31, 2019
    (IF = 2.547)

19. Guselnikov SV, Belovezhets TN, Kulemzin SV, Gorchakov AA, Taranin AV. A simple way to increase recovery of the expressed VH and VL genes in single-sorted human B cells. (doi: 10.2144/btn-2019-0079) BioTechniques 67(4): 184-187, 2019
    (IF = 1.659)

20. Lisachov AP, Makunin AI, Giovannotti M, Pereira JC, Druzhkova AS, Barucchi VC, Ferguson-Smith MA, Trifonov VA. Genetic content of the neo-sex chromosomes in Ctenonotus and Norops (Squamata, Dactyloidae) and degeneration of the Y chromosome as revealed by high-throughput sequencing of individual chromosomes. (doi: 10.1159/000497091) Cytogenet Genome Res 157(1-2): 115-122, 2019
    (IF = 1.423)

21. Lisachov AP, Galkina SA, Saifitdinova AF, Romanenko SA, Andreyushkova DA, Trifonov VA, Borodin PM. Identification of sex chromosomes in Eremias velox (Lacertidae, Reptilia) using lampbrush chromosome analysis. (doi: 10.3897/CompCytogen.v13i2.34116) Comp Cytogenet 13(2): 17-28, 2019
    (IF = 0.882)

22. Bakloushinskaya I, Lyapunova EA, Saidov AS, Romanenko SA, O'Brien PCM, Serdyukova NA, Ferguson-Smith MA, Matveevsky S, Bogdanov AS. Rapid chromosomal evolution in enigmatic mammal with XX in both sexes, the Alay mole vole Ellobius alaicus Vorontsov et al., 1969 (Mammalia, Rodentia). (doi: 10.3897/CompCytogen.v13i2.34224) Comp Cytogenet 13(2): 147-177, 2019
    (IF = 0.882)

23. Evtushenko EV, Lipikhina YuA, Stepochkin PI, Vershinin AV. Cytogenetic and molecular characteristics of rye genome in octoploid triticale (× Triticosecale Wittmack). (doi: 10.3897/CompCytogen.v13i4.39576) Comp Cytogenet 13(4): 423-434, 2019
    (IF = 0.882)

24. Khoroshko VA, Pokholkova GV, Zykova TYu, Osadchiy IS, Zhimulev IF. Gene dunce localization in the polytene chromosome of Drosophila melanogaster long span batch of adjacent chromosomal structures. (doi: 10.1134/S1607672919010137) Doklady Biochem Biophys 484(1): 55-58, 2019
    (IF = 0.612)

25. Pobedintseva MA, Makunin AI, Kichigin IG, Kulemzina AI, Serdyukova NA, Romanenko SA, Vorobieva NV, Interesova EA, Korentovich MA, Zaytsev VF, Mischenko AV, Zadelenov VA, Yurchenko AA, Sherbakov DYu, Graphodatsky AS, Trifonov VA. Population genetic structure and phylogeography of sterlet (Acipenser ruthenus, Acipenseridae) in the Ob and Yenisei river basins. (doi: 10.1080/24701394.2018.1467409) Mitochondrial DNA Part A 30(1): 156-164, 2019
    (IF = 0.566)

26. Kulemzin SV, Gorchakov AA, Taranin AV. Prostate cancer surface targets for CAR T cell therapy or metastatic prostate cancer in the CAR T cell era: My kingdom for the target! (doi: 10.18620/ctt-1866-8836-2019-8-4-19-28) Cell Ther Transplant 8(4): 19-28, 2019

27. Sidorenko DS, Zykova TYu, Khoroshko VA, Pokholkova GV, Demakov SA, Larsson J, Belyaeva ES, Zhimulev IF. Polytene chromosomes reflect functional organization of the Drosophila genome. (doi: 10.18699/VJ19.474) Вавиловский журнал генетики и селекции 23(2): 148-153, 2019

28. Andreyeva EN, Ogienko AA, Yushkova AA, Popova JV, Pavlova GA, Kozhevnikova EN, Ivankin AV, Gatti M, Pindyurin AV. Non3 is an essential Drosophila gene required for proper nucleolus assembly. (doi: 10.18699/VJ19.481) Вавиловский журнал генетики и селекции 23(2): 190-198, 2019

29. Lebedev MO, Yarinich LA, Ivankin AV, Pindyurin AV. Generation of barcoded plasmid libraries for massively parallel analysis of chromatin position effects. (doi: 10.18699/VJ19.483) Вавиловский журнал генетики и селекции 23(2): 203-211, 2019

30. Omelina ES, Pindyurin AV. Optogenetic regulation of endogenous gene transcription in mammals. (doi: 10.18699/VJ19.485) Вавиловский журнал генетики и селекции 23(2): 219-225, 2019

31. Andreyenkova NG, Starikov IJ, Wink M, Karyakin IV, Andreyenkov OV, Zhimulev IF. The problems of genetic support of dividing the black kite (Milvus migrans) into subspecies. (doi: 10.18699/VJ19.486) Вавиловский журнал генетики и селекции 23(2): 226-231, 2019

32. Сергийко СВ, Лукьянов СА, Титов СЕ, Веряскина ЮА. Молекулярно-генетическое тестирование в дифференциальной диагностике узловых образований щитовидной железы с цитологическим заключением фолликулярная опухоль Bethesda IV. (doi: 10.32000/2072-1757-2019-4-149-152) Практическая медицина 17(4): 149-152, 2019

Публикации за 2014-2018