Department of the Diversity and Evolution of Genomes

Laboratory of Comparative Genomics

Trifonov Vladimir
Head of the Laboratory
Staff: 
      Name Position Academic
degree
Contacts
thomson_logo.gif scopus_logo.jpg Trifonov Vladimir head PhD (Biology) vladatmcb [dot] nsc [dot] ru
thomson_logo.gif scopus_logo.jpg Vorobieva Nadezhda senior research fellow PhD (Biology) vornatmcb [dot] nsc [dot] ru
thomson_logo.gif scopus_logo.jpg Biltueva Larissa senior research fellow PhD (Biology) bilaratmcb [dot] nsc [dot] ru
thomson_logo.gif scopus_logo.jpgscopus_logo.jpgscopus_logo.jpg Beklemisheva (Eremina) Violetta research fellow PhD (Biology) beklatmcb [dot] nsc [dot] ru
      Pobedintseva Maria research assistant    
thomson_logo.gif scopus_logo.jpg Kichigin Ilya part-time research assistant    
      Andreyushkova Daria      
      Prokopov Dmitry      

Former research workers

Dementieva Polina, PhD

Recent publications: 
  1. de Oliveira EA, Sember A, Bertollo LAC, Yano CF, Ezaz T, Moreira-Filho O, Hatanaka T, Trifonov V, Liehr T, Al-Rikabi ABH, Ráb P, Pains H, de Bello Cioffi M. Tracking the evolutionary pathway of sex chromosomes among fishes: characterizing the unique XX/XY1Y2 system in Hoplias malabaricus (Teleostei, Characiformes). Chromosoma, 2017, doi: 10.1007/s00412-017-0648-3

  2. Sangpakdee W, Tanomtong A, Chaveerach A, Pinthong K, Trifonov V, Loth K, Hensel C, Liehr T, Weise A, Fan X. Molecular cytogenetic analysis of one african and five asian macaque species reveals identical karyotypes as in mandrill. Curr Genomics, 2017, doi: 10.2174/1389202918666170721115047

  3. Andreyushkova DA, Makunin AI, Beklemisheva VR, Romanenko SA, Druzhkova AS, Biltueva LB, Serdyukova NA, Graphodatsky AS, Trifonov VA. Next generation sequencing of chromosome-specific libraries sheds light on genome evolution in paleotetraploid sterlet (Acipenser ruthenus). Genes 8(11): 318, 2017

  4. Biltueva LS, Prokopov DY, Makunin AI, Komissarov AS, Kudryavtseva AV, Lemskaya NA, Vorobieva NV, Serdyukova NA, Romanenko SA, Gladkikh OL, Graphodatsky AS, Trifonov VA. Genomic organization and physical mapping of tandemly arranged repetitive DNAs in sterlet (Acipenser ruthenus). Cytogenet Genome Res 152: 148-157, 2017

  5. Dymova MA, Zadorozhny AV, Mishukova OV, Khrapov EA, Druzhkova AS, Trifonov VA, Kichigin IG, Tishkin AA, Grushin SP, Filipenko ML. Mitochondrial DNA analysis of ancient sheep from Altai. Anim Genet 48(5): 615-618, 2017

  6. Proskuryakova AA, Kulemzina AI, Perelman PL, Makunin AI, Larkin DM, Farré M, Kukekova AV, Johnson JL, Lemskaya NA, Beklemisheva VR, Roelke-Parker ME, Bellizzi J, Ryder OA, O’Brien SJ, Graphodatsky AS. X chromosome evolution in Cetartiodactyla. Genes 8(9): 216, 2017

  7. Poplavskaya NS, Romanenko SA, Serdyukova NA, Trifonov VA, Yang F, Nie W, Wang J, Bannikova AA, Surov AV, Lebedev VS. Karyotype evolution and phylogenetic relationships of Cricetulus sokolovi Orlov et Malygin 1988 (Cricetidae, Rodentia) inferred from chromosomal painting and molecular data. Cytogenet Genome Res 152: 65-72, 2017

  8. Trifonov VA, Makunin AI, Romanenko SA, Biltueva LS, Beklemisheva VR, Pobedintseva MA, Prokopov DYu, Andreyushkova DA, Graphodatsky AS. Whole genome duplications in vertebrate evolution. Mol Cytogenet 10(Suppl 1): 20(L17), 2017

  9. Volleth M, Son NT, Wu Y, Li YC, Yu WH, Lin LK, Arai S, Trifonov V, Liehr T, Harada M. Comparative chromosomal studies in Rhinolophus formosae and R. luctus from China and Vietnam: elevation of R.l. lanosus to species rank. Acta Chiropterologica 19(1): 41-50, 2017

  10. Lisachov AP, Trifonov VA, Giovannotti M, Ferguson-Smith MA, Borodin PM. Heteromorphism of “homomorphic” sex chromosomes in two Anole species (Squamata, Dactyloidae) revealed by synaptonemal complex analysis. Cytogenet Genome Res  151: 89-95, 2017

  11. Volleth M, Son NT, Wu Y, Li Y, Yu W, Lin L-K, Arai S, Trifonov V, Liehr T, Harada M. Comparative chromosomal studies in Rhinolophus formosae and R. luctus from China and Vietnam: elevation of R. l. lanosus to species rank. Acta Chiropterologica 19(1): 41–50, 2017

  12. Giovannotti M, Trifonov VA, Paoletti A, Kichigin IG, O’Brien PCM, Kasai F, Giovagnoli G, Ng BL, Ruggeri P, Nisi Cerioni P, Splendiani A, Pereira JC, Olmo E, Rens W, Caputo Barucchi V, Ferguson-Smith MA. New insights into sex chromosome evolution in anole lizards (Reptilia, Dactyloidae). Chromosoma 126(2): 245-260, 2017

  13. Kubicova E, Trifonov V, Borovecki F, Liehr T, Rincic M, Kosyakova N, Hussein SS. First molecular cytogenetic characterization of murine malignant mesothelioma cell line AEl7 and in silico translation to the human genome. Curr Bioinform 12(1): 11-18, 2017

  14. Rajičić M, Romanenko SA, Karamysheva TV, Blagojević J, Adnađević T, Budinski I, Bogdanov AS, Trifonov VA, Rubtsov NB, Vujošević M. The origin of B chromosomes in yellow-necked mice (Apodemus flavicollis) - Break rules but keep playing the game. PLoS ONE  12(3): e0172704, 2017

  15. Dyomin AG, Danilova MI, Mwacharo JM, Masharsky AE, Panteleev AV, Druzhkova AS, Trifonov VA, Galkina SA. Mitochondrial DNA D-loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia. J Anim Breed Genet 134(2): 98–108, 2017

  16. Lisachov AP, Trifonov VA, Giovannotti M, Ferguson-Smith MA, Borodin PM. Immunocytological analysis  of  meiotic  recombination  in  two  anole  lizards  (Squamata,  Dactyloidae).  Comp Cytogen 11(1): 129–141, 2017 

  17. Druzhkova AS, Makunin AI, Vorobieva NV, Vasiliev SK, Ovodov ND, Shunkov MV, Trifonov VA, Graphodatsky AS. Complete mitochondrial genome of an extinct Equus (Sussemionusovodovi specimen from Denisova cave (Altai, Russia). Mitochondrial DNA Part B 2(1): 79-81, 2017

  18. Yano CF, Bertollo LAC, Ezaz T, Trifonov V, Sember A, Liehr T, Cioffi MB. Highly conserved Z and molecularly diverged W chromosomes in the fish genus Triportheus (Characiformes, Triportheidae). Heredity 118: 276-283, 2017

  19. Yang F, Trifonov V, Ng BL, Kosyakova N, Carter NP. Generation of paint probes from flow-sorted and microdissected chromosomes. Fluorescence In Situ Hybridization (FISH). Application Guide. (ed. T Liehr). 2nd ed. 606 p. Springer-Verlag Berlin Heidelberg. 2017. pp. 63-79

  20. Trifonov VA, Vorobieva NV, Serdyukova NA, Rens W. FISH with and without COT1 DNA. Fluorescence In Situ Hybridization (FISH). Application Guide. (ed. T Liehr). 2nd ed. 606 p. Springer-Verlag Berlin Heidelberg. 2017. pp. 123-132

  21. Lisachov AP, Trifonov VA, Giovannotti M, Ferguson-Smith MA, Borodin PM. Meiotic synapsis and recombination in two Anolis species (Dactyloidae, Reptilia). Chromosome Res 24(Suppl 1): S24-S25, 2016
  22. Proskuryakova AA, Kulemzina AI, Beklemisheva VR, Lemskaya NA, Perelman PL, Graphodatsky AS. Chromosome organization features of the grey whale (Cetacea). Chromosome Res 24(Suppl 1): S28, 2016

  23. Trifonov  VA, Romanenko SS, Beklemisheva VR, Biltueva LS, Makunin AI, Lemskaya NA, Kulemzina AI, Prokopov DY, Vorobieva NV, Graphodatsky AS. Evolutionary plasticity of Sturgeon genomes. Cytogenet Genome Res 148: 103, 2016

  24. Beklemisheva  V, Perelman P, Lemskaya N, Kulemzina A, Proskuryakova A, Burkanov V, Graphodatsky A. Refinement of the ancestral Carnivore karyotype based on comparative chromosome painting of Pinnipeds (Pinnipedia, Carnivora). Cytogenet Genome Res 148: 105, 2016

  25. Gladkikh OL, Romanenko SA, Lemskaya NA, Serdyukova NA, O’Brien PCM, Kovalskaya JM, Smorkatcheva AV, Golenishchev FN, Perelman PL, Trifonov VA, Ferguson-Smith MA, Yang F, Graphodatsky AS. Rapid karyotype evolution in Lasiopodomys involved at least two autosome – sex chromosome translocations. PLoS ONE 11(12): e0167653, 2016

  26. Kichigin IG, Giovannotti M, Makunin AI, Ng BL, Kabilov MR, Tupikin AE, Barucchi VC, Splendiani A, Ruggeri P, Rens W, O’Brien PCM, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA. Evolutionary dynamics of Anolis sex chromosomes revealed by sequencing of flow sorting-derived microchromosome-specific DNA. Mol Genet Genomics 291: 1955-1966, 2016

  27. Trifonov VA, Romanenko SS, Beklemisheva VR, Biltueva LS, Makunin AI, Lemskaya NA, Kulemzina AI, Stanyon R, Graphodatsky AS. Evolutionary plasticity of acipenseriform genomes. Chromosoma 125: 661-668, 2016

  28. Makunin AI, Kichigin IG, Larkin DM, O’Brien PCM, Ferguson-Smith MA, Yang F, Proskuryakova AA, Vorobieva NV, Chernyaeva EN, O’Brien SJ, Graphodatsky AS, Trifonov VA. Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosomespecific DNA sequencing. BMC Genomics 17: 618, 2016

  29. Kuznetsova IS, Ostromyshenskii DI, Komissarov AS, Prusov AN, Waisertreiger IS, Gorbunova AV, Trifonov VA, Ferguson-Smith MA, Podgornaya OI. LINE-related component of mouse heterochromatin and complex chromocenters’ composition. Chromosome Res 24: 309-323, 2016

  30. Sessions SK, Bizjak Mali L, Green DM, Trifonov V, Ferguson-Smith M. Evidence for sex chromosome turnover in Proteid salamanders. Cytogenet Genome Res 148: 305-313, 2016

  31. Montiel EE, Badenhorst D, Lee LS, Literman R, Trifonov V, Valenzuela N. Cytogenetic insights into the evolution of chromosomes and sex determination reveal striking homology of turtle sex chromosomes to amphibian autosomes. Cytogenet Genome Res 148: 292-304, 2016

  32. Kulemzina AI, Proskuryakova AA, Beklemisheva VR, Lemskaya NA, Perelman PL, Graphodatsky AS. Comparative chromosome map and heterochromatin features of the gray whale karyotype (Cetacea). Cytogenet Genome Res 148: 25-34, 2016

  33. Bian C,... Trifonov V,... Shi Q. The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts. (doi: 10.1038/srep24501) Sci Repts 6: 24501, 2016

  34. Vij S,... Trifonov V,...Orbán L. Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding. PLoS Genet 12(4): e1005954, 2016

  35. Utsunomia R, Silva DM, Ruiz-Ruano FJ, Araya-Jaime C, Pansonato-Alves JC, Scacchetti PC, Hashimoto DT, Oliveira C, Trifonov VA, Porto-Foresti F, Camacho JP, Foresti F. Uncovering the ancestry of B chromosomes in Moenkhausia sanctaefilomenae (Teleostei, Characidae). PLoS One 11(3): e0150573, 2016

  36. Beklemisheva VR, Perelman PL, Lemskaya NA, Kulemzina AI, Proskuryakova AA, Burkanov VN, Graphodatsky AS. The ancestral carnivore karyotype as substantiated by comparative chromosome painting of three pinnipeds, the walrus, the steller sea lion and the Baikal seal (Pinnipedia, Carnivora). PLoS ONE 11(1): e0147647, 2016

  37. Romanenko SA, Lemskaya NA, Trifonov VA, Serdyukova NA, O’Brien PCM, Bulatova NSh, Golenishchev FN, Ferguson-Smith MA, Yang F, Graphodatsky AS. Genome-wide comparative chromosome maps of Arvicola amphibius, Dicrostonyx torquatus, and Myodes rutilus. Chromosome Res 24: 145-159, 2016

  38. Romanenko SA, Biltueva LS, Serdyukova NA, Kulemzina AI, Beklemisheva VR, Gladkikh OL, Lemskaya NA, Interesova EA, Korentovich MA, Vorobieva NV, Graphodatsky AS, Trifonov VA. Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting. Mol Cytogenet 8: 90, 2015

  39. Trifonov VA, Paoletti A, Caputo Barucchi V, Kalinina T, O’Brien PCM, Ferguson-Smith MA, Giovannotti M. Comparative chromosome painting and NOR distribution suggest a complex hybrid origin of triploid Lepidodactylus lugubris (Gekkonidae). PLoS ONE 10(7): e0132380, 2015

  40. Romanenko SA, Perelman PP, Trifonov VA, Serdyukova NA, Li T, Fu B, O’Brien PCM, Ng BL, Nie W, Liehr T, Stanyon R, Graphodatsky AS, Yang F. A first generation comparative chromosome map between guinea pig (Cavia porcellus) and humans. PLoS ONE 10(5): e0127937, 2015

  41. Weise A, Kosyakova N, Voigt M, Aust N, Mrasek K, Löhmer S, Rubtsov N, Karamysheva TV, Trifonov VA, Hardekopf D, Jančušková T, Pekova S, Wilhelm K, Liehr T, Fan X. Comprehensive analyses of white-handed gibbon chromosomes enables access to 92 evolutionary conserved breakpoints compared to the human genome. Cytogenet Genome Res 145: 42-49, 2015

  42. Pokorná MJ, Trifonov VA, Rens W, Ferguson-Smith MA, Kratochvíl L. Low rate of interchromosomal rearrangements during old radiation of gekkotan lizards (Squamata: Gekkota). Chromosome Res 23: 299-309, 2015

  43. Avila F, Baily MP, Merriwether DA, Trifonov VA, Rubes J, Kutzler MA, Chowdhary R, Janečka J, Raudsepp T. A cytogenetic and comparative map of camelid chromosome 36 and the minute in alpacas. Chromosome Res 23: 237-251, 2015

  44. Fan X, Supiwong W, Weise A, Mrasek K, Kosyakova N, Tanomtong A, Pinthong K, Trifonov VA, de Bello Cioffi M, Grothmann P, Liehr T, de Oliveira EHC. Comprehensive characterization of evolutionary conserved breakpoints in four New World Monkey karyotypes compared to Chlorocebus aethiops and Homo sapiens. Heliyon 1(3): e00042, 2015

  45. Biltueva L, Kulemzina A, Vorobieva N, Perelman P, Kochneva M, Zhidenova A, Graphodatsky A. A new case of an inherited reciprocal translocation in cattle: rcp(13;26)(q24;q11). Cytogenet Genome Res 144: 208-211, 2014

  46. Makunin AI, Dementyeva PV, Graphodatsky AS, Volobujev VT, Kukekova AV, Trifonov VA. Genes on B chromosomes of vertebrates. Mol Cytogenet 7: 99, 2014

  47. Fan X, Sangpakdee W, Tanomtong A, Chaveerach A, Pinthong K, Pornnarong S, Supiwong W, Trifonov VA, Hovhannisyan GG, Aroutiounian RM, Liehr T, Weise A. Molecular cytogenetic analysis of Thai southern pig-tailed macaque (Macaca nemestrina) by multicolor banding. Proc Yerevan State University. Chem Biol 1: 46-50, 2014 

  48. Fan X, Sangpakdee W, Tanomtong A, Chaveerach A, Pinthong K, Pornnarong S, Supiwong W, Trifonov V, Hovhannisyan G, Loth K, Hensel C, Liehr T, Weise A. Comprehensive molecular cytogenetic analysis of Barbary macaque (Macaca sylvanus).  Biol J Armenia 66(1): 98-102, 2014

  49. Cioffi MB, Liehr T, Trifonov V, Molina WF, Bertollo LAC. Independent sex chromosome evolution in lower vertebrates: A molecular cytogenetic overview in the Erythrinidae fish family. Cytogen Genome Res 141: 186-194, 2013

  50. Kosyakova N, Hamid AB, Chaveerach A, Pinthong K, Siripiyasing P, Supiwong W, Romanenko S, Trifonov V, Fan X. Generation of multicolor banding probes for chromosomes of different species. Mol Cytogen 6: 6, 2013

  51. Parise-Maltempi PP, da Silva EL, Rens W, Dearden F, O'Brien PCM, Trifonov V, Ferguson-Smith MA. Comparative analysis of sex chromosomes in Leporinus species (Teleostei, Characiformes) using chromosome painting. BMC Genetics 14: 60, 2013

  52. Trifonov VA, Dementyeva PV, Larkin DM, O’Brien PCM, Perelman PL, Yang F, Ferguson-Smith MA, Graphodatsky AS. Transcription of a protein-coding gene on b-chromosomes of the siberian roe deer (Capreolus pygargus). BMC Biology 11: 90, 2013

  53. Leibiger C, Kosyakova N, Mkrtchyan H, Glei M, Trifonov V, Liehr T. First molecular cytogenetic high resolution characterization of the NIH 3T3 cell line by murine multicolor banding. J Histochem Cytochem 61: 306-312, 2013

  54. Tchurikov NA, Kretova OV, Fedoseeva DM, Sosin DV, Grachev SA, Serebraykova MV, Romanenko SA, Vorobieva NV, Kravatsky YV. DNA double-strand breaks coupled with PARP1 and HNRNPA2B1 binding sites flank coordinately expressed domains in human chromosomes. PLoS Genet 9(4): e1003429, 2013

  55. Druzhkova AS, Thalmann O, Trifonov VA, Leonard JA, Vorobieva NV, Ovodov ND, Graphodatsky AS, Wayne RK. Ancient DNA analysis affirms the canid from Altai as a primitive dog. PLoS ONE 8(3): e57754, 2013

  56. Biltueva L, Vorobieva N. Chromosome evolution in Eulipotyphla. Cytogen Genome Res 137: 154-164, 2012

  57. Perelman PL, Beklemisheva VR, Yudkin DV, Petrina TN, Rozhnov VV, Nie W, Graphodatsky AS. Comparative chromosome painting in Carnivora and Pholidota. Cytogen Genome Res 137: 174-193, 2012

  58. Trifonov VA, Musilova P, Kulemsina AI. Chromosome evolution in the Perissodactyla. Cytogen Genome Res 137: 208-217, 2012

  59. Bucksch M, Ziegler M, Kosayakova N, Mulhatino MV, Llerena JC Jr, Morlot S, Fischer W, Polityko AD, Kulpanovich AI, Petersen MB, Belitz B, Trifonov V, Weise A, Liehr T, Hamid AB. A New multicolor fluorescence in situ hybridization probe set directed against human heterochromatin: HCM-FISH. J Histochem Cytochem 60: 530-536, 2012

  60. Romanenko SA, Perelman PL, Trifonov VA, Graphodatsky AS. Chromosomal evolution of Rodentia. Heredity 108: 4-16, 2012

  61. Xiaobo F, Liehr T, Voigt M, Kosyakova N, Mrasek K, Trifonov V, Karamysheva T, Rubtsov N, Weise A. Array painting in Hylobates lar characterizes in detail 44 evolutionary conserved breakpoints. Chromosome Res 20: 807, 2012

  62. Pokorná M, Kratochvíl L, Giovannotti M, Trifonov VA, Ferguson-Smith MA, Caputo V, Olmo E, Rens W. A slow rate of chromosome evolution unites squamate reptiles. Chromosome Res 20: 808, 2012

Selected talks: 
  1. Trivonof V. Whole genome duplications in vertebrate evolution. 11th European Cytogenetics Conference, 1-4 July 2017, Florence, Italy

  2. Beklemisheva V. Refinement of the ancestral carnivore karyotype based on the comparative chromosome painting of pinnipeds (Pinnipedia, Carnivora). 21st International Chromosome Conference. 10-13 July 2016, Foz do Iguaçu, Brazil

  3. Trifonov V. Evolutionary plasticity of sturgeon genomes. 21st International Chromosome Conference. 10-13 July 2016, Foz do Iguaçu, Brazil

  4. Trifonov VA. Application of molecular cytogenetic technologies for the study of sex chromosomes. Meeting intended to facilitate design of strategies to study the impact of mitonuclear incompatibilities in the diversification of animals. 14-16 October 2015, University of A Coruña, Spain

  5. Trifonov VA. Molecular composition and evolution of cervid B chromosomes. 3rd B-Chromosome Conference, 7-9 April 2014, Gatersleben, Germany

  6. Trifonov VA. Amplification of genes on mammalian B chromosomes. The 19th International Chromosome Conference. 2-6 September 2013, Bologna, Italy

  7. Biltueva LS. Karyotype evolution of Eulipotyphla. The genome homology of Sorex species revealed by comparative chromosome painting and banding data. VIth European Congress of Mammology, 19-23 July 2011, Paris, France

  8. Trifonov VA. Amplification of genes on mammalian B chromosomes. Second Conference of Brazilian Cytogenetics, 28-30 August 2011, Aguas de Lindoia, Brazil

  9. Trifonov VA. Isolation and analysis of coding sequences from B-chromosomes of the Red Fox (Vulpes vulpes) and Siberian Roe Deer (Capreolus pygargus). 2nd Congress of the International Cytogenetics and Genome Society and Digital Scientific UK Users Group Meeting, 25-29 June 2006, Canterbury, UK

  10. Biltueva L. Karyotypic relationships in the Insectivora. The 8th Meeting of the International Sorex araneus Cytogenetic Committee (ISACC). 8-12 August 2008, York, UK