Публикации и материалы конференций Лаборатории сравнительной геномики

2017

  • Andreyushkova DA, Makunin AI, Beklemisheva VR, Romanenko SA, Druzhkova AS, Biltueva LB, Serdyukova NA, Graphodatsky AS, Trifonov VA. Next generation sequencing of chromosome-specific libraries sheds light on genome evolution in paleotetraploid sterlet (Acipenser ruthenus). (doi: 10.3390/genes8110318Genes 8(11): 318, 2017

  • Biltueva LS, Prokopov DY, Makunin AI, Komissarov AS, Kudryavtseva AV, Lemskaya NA, Vorobieva NV, Serdyukova NA, Romanenko SA, Gladkikh OL, Graphodatsky AS, Trifonov VA. Genomic organization and physical mapping of tandemly arranged repetitive DNAs in sterlet (Acipenser ruthenus). (doi: 10.1159/000479472Cytogenet Genome Res 152: 148-157, 2017

  • Dymova MA, Zadorozhny AV, Mishukova OV, Khrapov EA, Druzhkova AS, Trifonov VA, Kichigin IG, Tishkin AA, Grushin SP, Filipenko ML. Mitochondrial DNA analysis of ancient sheep from Altai. (doi: 10.1111/age.12569Anim Genet 48(5): 615-618, 2017

  • Poplavskaya NS, Romanenko SA, Serdyukova NA, Trifonov VA, Yang F, Nie W, Wang J, Bannikova AA, Surov AV, Lebedev VS. Karyotype evolution and phylogenetic relationships of Cricetulus sokolovi Orlov et Malygin 1988 (Cricetidae, Rodentia) inferred from chromosomal painting and molecular data. (doi: 10.1159/000477521Cytogenet Genome Res 152: 65-72, 2017

  • Lisachov AP, Trifonov VA, Giovannotti M, Ferguson-Smith MA, Borodin PM. Heteromorphism of “homomorphic” sex chromosomes in two Anole species (Squamata, Dactyloidae) revealed by synaptonemal complex analysis. (doi: 10.1159/000460829Cytogenet Genome Res 151: 89-95, 2017

  • Volleth M, Son NT, Wu Y, Li Y, Yu W, Lin L-K, Arai S, Trifonov V, Liehr T, Harada M. Comparative chromosomal studies in Rhinolophus formosae and R. luctus from China and Vietnam: elevation of R. l. lanosus to species rank. (doi: 10.3161/15081109ACC2017.19.1.003Acta Chiropterologica 19(1): 41-50, 2017

  • Giovannotti M, Trifonov VA, Paoletti A, Kichigin IG, O’Brien PCM, Kasai F, Giovagnoli G, Ng BL, Ruggeri P, Nisi Cerioni P, Splendiani A, Pereira JC, Olmo E, Rens W, Caputo Barucchi V, Ferguson-Smith MA. New insights into sex chromosome evolution in anole lizards (Reptilia, Dactyloidae). (doi: 10.1007/s00412-016-0585-6Chromosoma 126(2): 245-260, 2017

  • Kubicova E, Trifonov V, Borovecki F, Liehr T, Rincic M, Kosyakova N, Hussein SS. First molecular cytogenetic characterization of murine malignant mesothelioma cell line AEl7 and in silico translation to the human genome. (doi: 10.2174/1574893611666160606164459Curr Bioinform 12(1): 11-18, 2017

  • Rajičić M, Romanenko SA, Karamysheva TV, Blagojević J, Adnađević T, Budinski I, Bogdanov AS, Trifonov VA, Rubtsov NB, Vujošević M. The origin of B chromosomes in yellow-necked mice (Apodemus flavicollis) - Break rules but keep playing the game. (doi: 10.1371/journal.pone.0172704PLoS ONE  12(3): e0172704, 2017

  • Dyomin AG, Danilova MI, Mwacharo JM, Masharsky AE, Panteleev AV, Druzhkova AS, Trifonov VA, Galkina SA. Mitochondrial DNA D-loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia. (doi: 10.1111/jbg.12248J Anim Breed Genet 134(2): 98-108, 2017

  • Lisachov AP, Trifonov VA, Giovannotti M, Ferguson-Smith MA, Borodin PM. Immunocytological analysis  of  meiotic  recombination  in  two  anole  lizards  (Squamata, Dactyloidae). (doi: 10.3897/CompCytogen.v11i1.10916Comp Cytogenet 11(1): 129-141, 2017 

  • Druzhkova AS, Makunin AI, Vorobieva NV, Vasiliev SK, Ovodov ND, Shunkov MV, Trifonov VA, Graphodatsky AS. Complete mitochondrial genome of an extinct Equus (Sussemionusovodovi specimen from Denisova cave (Altai, Russia). (doi: 10.1080/23802359.2017.1285209Mitochondrial DNA Part B 2(1): 79-81, 2017

  • Yano CF, Bertollo LAC, Ezaz T, Trifonov V, Sember A, Liehr T, Cioffi MB. Highly conserved Z and molecularly diverged W chromosomes in the fish genus Triportheus (Characiformes, Triportheidae). (doi: 10.1038/hdy.2016.83Heredity 118: 276-283, 2017

  • Yang F, Trifonov V, Ng BL, Kosyakova N, Carter NP. Generation of paint probes from flow-sorted and microdissected chromosomes. Fluorescence In Situ Hybridization (FISH). Application Guide. (ed. T Liehr). 2nd ed. 606 p. Springer-Verlag Berlin Heidelberg. 2017. pp. 63-79 (doi: 10.1007/978-3-662-52959-1_6)

  • Trifonov VA, Vorobieva NV, Serdyukova NA, Rens W. FISH with and without COT1 DNA. Fluorescence In Situ Hybridization (FISH). Application Guide. (ed. T Liehr). 2nd ed. 606 p. Springer-Verlag Berlin Heidelberg. 2017. pp. 123-132 (doi: 10.1007/978-3-662-52959-1_11)

  • Гусельников СВ, Баранов КО, Кулемзин СВ, Макунин АИ, Трифонов ВА, Таранин АВ. Легкие Цепи иммуноглобулинов стерляди Acipenser ruthenus: генерируемое разнообразие и молекулярная эволюция. Беляевские чтения. Тезисы докладов Международной конференции, посвященной 100-летию со дня рождения академика АН СССР Д.К. Беляева. Новосибирск, 2017. с. 27

  • Andreyushkova DA, Makunin AI, Beklemisheva VR, Romanenko SA, Druzhkova AS, Kulemzina AI, Biltueva LS, Serdyukova NA, Graphodatsky AS, Trifonov VA. Revealing of the chromosome synteny regions between sterlet (Acipenser ruthenus) and spotter gar (Lepisosteus oculatus). Беляевские чтения. Тезисы докладов Международной конференции, посвященной 100-летию со дня рождения академика АН СССР Д.К. Беляева. Новосибирск, 2017. с. 113

  • Trifonov VA, Makunin AI, Romanenko SA, Biltueva LS, Beklemisheva VR, Pobedintseva MA, Prokopov DYu, Andreyushkova DA, Graphodatsky AS. Whole genome duplications in vertebrate evolution. Mol Cytogenet 10 (Suppl 1): 20(L17), 2017

  • Дружкова АС, Макунин АИ, Воробьева НВ, Васильев СК, Оводов НД, Шуньков МВ, Трифонов ВА, Графодатский АС. Сборка полного митохондриального генома лошади Оводов (Equus ovodovi) из Денисовой пещеры. Acta Naturae 9 (Спецвыпуск 1): 71, 2017

  • Дружкова АС, Воробьева НВ, Макунин АИ, Васильев СК, Оводов НД, Тишкин АА, Трифонов ВА, Графодатский АС. Секвенирование митохондриальных геномов древних и современных представителей семейства медвежьи (Ursidae) Западной Сибири. Acta Naturae 9 (Спецвыпуск 1): 71, 2017

  • Куслий МА, Дружкова АС, Воробьева НВ, Макунин АИ, Тишкин АА, Попова КО, Графодатский АС, Трифонов ВА, Дымова МА, Филипенко МЛ. Генотипирование древнихлошадей археологического памятника Яломан-II. Acta Naturae 9 (Спецвыпуск 1): 72, 2017

  • Попова КО, Воробьева НВ, Дружкова АС, Макунин АИ, Васильев СК, Оводов НД, Трифонов ВА, Графодатский АС. Изучение древней ДНК: митогеномы и В-хромосомы сибирской косули. Acta Naturae 9 (Спецвыпуск 1): 72, 2017

  • Андреюшкова ДА, Макунин АИ, Беклемишева ВР, Романенко СА, Дружкова АС, Билтуева ЛС, Сердюкова НА, Графодатский АС, Трифонов ВА. Анализ микродиссекционных библиотек хромосом стерляди (Acipenser ruthenus) с использованием данных высокопроизводительного секвенирования. Acta Naturae 9 (Спецвыпуск 1): 75, 2017

  • Гусельников СВ, Кулемзин СВ, Горчаков АА, Чикаев НА, Макунин АИ, Трифонов ВА, Таранин АВ. Изучение перестраиваемых цепей Т-клеточного рецептора у стерляди Acipenser ruthenus с использованием платформы Illumina MiSeq. Acta Naturae 9 (Спецвыпуск 1): 76, 2017

  • Макунин АИ, Прокопов ДЮ, Кичигин ИГ, Дружкова АС, Графодатский АС, Трифонов ВА. Высокопроизводительное секвенированиеотдельных хромосом. Acta Naturae 9 (Спецвыпуск 1): 78, 2017

  • Побединцева МА, Макунин АИ, Дружкова АС, Сердюкова НА, Воробьева НВ, Интересова ЕА, Графодатский АС, Трифонов ВА. Молекулярная филогения гаплогрупп стерляди Acipenser ruthenus и сибирского осетра A. baerii, основанная на анализе полных митохондриальный геномов. Acta Naturae 9 (Спецвыпуск 1): 78, 2017

  • Прокопов ДЮ, Макунин АИ, Романенко СА, Дружкова АС, Графодатский АС, Трифонов ВА. Изучение кариотипа копытного лемминга (Dicrostonyx torquatus) с помощью метода высокопроизводительного секвенирования отдельных хромосом. Acta Naturae 9 (Спецвыпуск 1): 79, 2017

  • Трифонов ВА, Макунин АИ, Романенко СА, Беклемишева ВР, Билтуева ЛС, Прокопов ДЮ, Побединцева МА, Дружкова АС, Андреюшкова ДА, Гусельников СВ, Сердюкова НА, Кудрявцева АВ, Комиссаров АС, Кливер СФ, Шартл М, Графодатский АС. Секвенирование и анализ генома и транскриптома стерляди (Acipenser ruthenus). Acta Naturae 9 (Спецвыпуск 1): 80, 2017

  • Трифонов ВА, Макунин АИ, Романенко СА, Беклемишева ВР, Билтуева ЛС, Прокопов ДЮ, Побединцева МА, Дружкова АС, Андреюшкова ДА, Гусельников СВ, Сердюкова НА, Кудрявцева АВ, Комиссаров АС, Кливер СФ, Шартл М, Графодатский АС. Секвенирование и анализ генома и транскриптома стерляди (Acipenser ruthenus). Acta Naturae 9 (Спецвыпуск 1): 80, 2017

2016

  • Галкина СА, Демин АГ, Пантелеев АВ, Дружкова АС, Трифонов ВА, Григорьева НВ. Перспективы и методика анализа ДНК ископаемых костей домашней курицы, обнаруженных при археологических раскопках. В кн. Ладога и проблемы древной и средневековой истории северной Евразии. СПб: Нестор-История, 2016. С. 118-124
  • Gladkikh OL, Romanenko SA, Lemskaya NA, Serdyukova NA, O’Brien PCM, Kovalskaya JM, Smorkatcheva AV, Golenishchev FN, Perelman PL, Trifonov VA, Ferguson-Smith MA, Yang F, Graphodatsky AS. Rapid karyotype evolution in Lasiopodomys involved at least two autosome – sex chromosome translocations. (doi: 10.1371/journal.pone.0167653PLoS ONE 11(12): e0167653, 2016

  • Kichigin IG, Giovannotti M, Makunin AI, Ng BL, Kabilov MR, Tupikin AE, Barucchi VC, Splendiani A, Ruggeri P, Rens W, O’Brien PCM, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA. Evolutionary dynamics of Anolis sex chromosomes revealed by sequencing of flow sorting-derived microchromosome-specific DNA. (doi: 10.1007/s00438-016-1230-zMol Genet Genomics 291: 1955-1966, 2016

  • Trifonov VA, Romanenko SS, Beklemisheva VR, Biltueva LS, Makunin AI, Lemskaya NA, Kulemzina AI, Stanyon R, Graphodatsky AS. Evolutionary plasticity of acipenseriform genomes. (doi: 10.1007/s00412-016-0609-2Chromosoma 125: 661-668, 2016

  • Makunin AI, Kichigin IG, Larkin DM, O’Brien PCM, Ferguson-Smith MA, Yang F, Proskuryakova AA, Vorobieva NV, Chernyaeva EN, O’Brien SJ, Graphodatsky AS, Trifonov VA. Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosomespecific DNA sequencing. (doi: 10.1186/s12864-016-2933-6BMC Genomics 17: 618, 2016

  • Kuznetsova IS, Ostromyshenskii DI, Komissarov AS, Prusov AN, Waisertreiger IS, Gorbunova AV, Trifonov VA, Ferguson-Smith MA, Podgornaya OI. LINE-related component of mouse heterochromatin and complex chromocenters’ composition. (doi: 10.1007/s10577-016-9525-9Chromosome Res 24: 309-323, 2016

  • Sessions SK, Bizjak Mali L, Green DM, Trifonov V, Ferguson-Smith M. Evidence for sex chromosome turnover in Proteid salamanders. (doi: 10.1159/000446882Cytogenet Genome Res 148: 305-313, 2016

  • Montiel EE, Badenhorst D, Lee LS, Literman R, Trifonov V, Valenzuela N. Cytogenetic insights into the evolution of chromosomes and sex determination reveal striking homology of turtle sex chromosomes to amphibian autosomes. (doi: 10.1159/000447478Cytogenet Genome Res 148: 292-304, 2016

  • Bian C,... Trifonov V,... Shi Q. The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts. (doi: 10.1038/srep24501) Sci Repts 6: 24501, 2016

  • Vij S,... Trifonov V,...Orbán L. Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding. (doi: 10.1371/journal.pgen.1005954PLoS Genet 12(4): e1005954, 2016

  • Utsunomia R, Silva DM, Ruiz-Ruano FJ, Araya-Jaime C, Pansonato-Alves JC, Scacchetti PC, Hashimoto DT, Oliveira C, Trifonov VA, Porto-Foresti F, Camacho JP, Foresti F. Uncovering the ancestry of B chromosomes in Moenkhausia sanctaefilomenae (Teleostei, Characidae). (doi: 10.1371/journal.pone.0150573PLoS One 11(3): e0150573, 2016

  • Romanenko SA, Lemskaya NA, Trifonov VA, Serdyukova NA, O’Brien PCM, Bulatova NSh, Golenishchev FN, Ferguson-Smith MA, Yang F, Graphodatsky AS. Genome-wide comparative chromosome maps of Arvicola amphibius, Dicrostonyx torquatus, and Myodes rutilus. (doi: 10.1007/s10577-015-9504-6Chromosome Res 24: 145-159, 2016

  • Куслий МА, Дружкова АС, Попова КО, Воробьева НВ, Макунин АИ, Юрлова АА, Тишкин АА, Миняев СС, Трифонов ВА, Графодатский АС, Дымова МА, Филипенко МЛ. Генотипирование и определение масти древних лошадей Бурятии. Цитология 58: 304-308, 2016

  • Кичигин ИГ, Андреюшкова ДА, Побединцева МА, Трифонов ВА. Многообразие типов генетического определения пола лучеперых рыб (Actinopterygii). Цитология 58: 405-411, 2016

  • Lisachov AP, Trifonov VA, Giovannotti M, Ferguson-Smith MA, Borodin PM. Meiotic synapsis and recombination in two Anolis species (Dactyloidae, Reptilia). Chromosome Res 24 (Suppl 1): S24-S25, 2016

  • Trifonov  VA, Romanenko SS, Beklemisheva VR, Biltueva LS, Makunin AI, Lemskaya NA, Kulemzina AI, Prokopov DY, Vorobieva NV, Graphodatsky AS. Evolutionary plasticity of Sturgeon genomes. Cytogenet Genome Res 148: 103, 2016

2015

  • Romanenko SA, Biltueva LS, Serdyukova NA, Kulemzina AI, Beklemisheva VR, Gladkikh OL, Lemskaya NA, Interesova EA, Korentovich MA, Vorobieva NV, Graphodatsky AS, Trifonov VA. Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting. (doi: 10.1186/s13039-015-0194-8Mol Cytogenet 8: 90, 2015

  • Trifonov VA, Paoletti A, Caputo Barucchi V, Kalinina T, O’Brien PCM, Ferguson-Smith MA, Giovannotti M. Comparative chromosome painting and NOR distribution suggest a complex hybrid origin of triploid Lepidodactylus lugubris (Gekkonidae). (doi: 10.1371/journal.pone.0132380PLoS ONE 10(7): e0132380, 2015

  • Дружкова АС, Воробьева НВ, Трифонов ВА, Графодатский АС. Древняя ДНК: итоги и перспективы (к 30-летию начала исследований). Генетика 51: 627–643, 2015

  • Romanenko SA, Perelman PP, Trifonov VA, Serdyukova NA, Li T, Fu B, O’Brien PCM, Ng BL, Nie W, Liehr T, Stanyon R, Graphodatsky AS, Yang F. A first generation comparative chromosome map between guinea pig (Cavia porcellus) and humans. (doi: 10.1371/journal.pone.0127937PLoS ONE 10(5): e0127937, 2015

  • Weise A, Kosyakova N, Voigt M, Aust N, Mrasek K, Löhmer S, Rubtsov N, Karamysheva TV, Trifonov VA, Hardekopf D, Jančušková T, Pekova S, Wilhelm K, Liehr T, Fan X. Comprehensive analyses of white-handed gibbon chromosomes enables access to 92 evolutionary conserved breakpoints compared to the human genome. (doi: 10.1159/000381764Cytogenet Genome Res 145: 42-49, 2015

  • Pokorná MJ, Trifonov VA, Rens W, Ferguson-Smith MA, Kratochvíl L. Low rate of interchromosomal rearrangements during old radiation of gekkotan lizards (Squamata: Gekkota). (doi: 10.1007/s10577-015-9468-6Chromosome Res 23: 299-309, 2015

  • Avila F, Baily MP, Merriwether DA, Trifonov VA, Rubes J, Kutzler MA, Chowdhary R, Janečka J, Raudsepp T. A cytogenetic and comparative map of camelid chromosome 36 and the minute in alpacas. (doi: 10.1007/s10577-014-9463-3Chromosome Res 23: 237-251, 2015

  • Fan X, Supiwong W, Weise A, Mrasek K, Kosyakova N, Tanomtong A, Pinthong K, Trifonov VA, de Bello Cioffi M, Grothmann P, Liehr T, de Oliveira EHC. Comprehensive characterization of evolutionary conserved breakpoints in four New World Monkey karyotypes compared to Chlorocebus aethiops and Homo sapiens. (doi: 10.1016/j.heliyon.2015.e00042Heliyon 1(3): e00042, 2015

2014

  • Biltueva L, Kulemzina A, Vorobieva N, Perelman P, Kochneva M, Zhidenova A, Graphodatsky A. A new case of an inherited reciprocal translocation in cattle: rcp(13;26)(q24;q11). (doi: 10.1159/000368950Cytogenet Genome Res 144: 208-211, 2014

  • Makunin AI, Dementyeva PV, Graphodatsky AS, Volobujev VT, Kukekova AV, Trifonov VA. Genes on B chromosomes of vertebrates. (doi: 10.1186/s13039-014-0099-yMol Cytogenet 7: 99, 2014

  • Fan X, Sangpakdee W, Tanomtong A, Chaveerach A, Pinthong K, Pornnarong S, Supiwong W, Trifonov VA, Hovhannisyan GG, Aroutiounian RM, Liehr T, Weise A. Molecular cytogenetic analysis of Thai southern pig-tailed macaque (Macaca nemestrina) by multicolor banding. Proc Yerevan State University. Chem Biol 1: 46-50, 2014 

  • Fan X, Sangpakdee W, Tanomtong A, Chaveerach A, Pinthong K, Pornnarong S, Supiwong W, Trifonov V, Hovhannisyan G, Loth K, Hensel C, Liehr T, Weise A. Comprehensive molecular cytogenetic analysis of Barbary macaque (Macaca sylvanus).  Biol J Armenia 66(1): 98-102, 2014

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2013

  • Cioffi MB, Liehr T, Trifonov V, Molina WF, Bertollo LAC. Independent sex chromosome evolution in lower vertebrates: A molecular cytogenetic overview in the Erythrinidae fish family. (doi: 10.1159/000354039Cytogen Genome Res 141: 186-194, 2013

  • Kosyakova N, Hamid AB, Chaveerach A, Pinthong K, Siripiyasing P, Supiwong W, Romanenko S, Trifonov V, Fan X. Generation of multicolor banding probes for chromosomes of different species. (doi: 10.1186/1755-8166-6-6Mol Cytogen 6: 6, 2013

  • Parise-Maltempi PP, da Silva EL, Rens W, Dearden F, O'Brien PCM, Trifonov V, Ferguson-Smith MA. Comparative analysis of sex chromosomes in Leporinus species (Teleostei, Characiformes) using chromosome painting. (doi: 10.1186/1471-2156-14-60BMC Genetics 14: 60, 2013

  • Trifonov VA, Dementyeva PV, Larkin DM, O’Brien PCM, Perelman PL, Yang F, Ferguson-Smith MA, Graphodatsky AS. Transcription of a protein-coding gene on b-chromosomes of the siberian roe deer (Capreolus pygargus). (doi: 10.1186/1741-7007-11-90BMC Biology 11: 90, 2013

  • Leibiger C, Kosyakova N, Mkrtchyan H, Glei M, Trifonov V, Liehr T. First molecular cytogenetic high resolution characterization of the NIH 3T3 cell line by murine multicolor banding. (doi: 10.1369/0022155413476868J Histochem Cytochem 61: 306-312, 2013

  • Tchurikov NA, Kretova OV, Fedoseeva DM, Sosin DV, Grachev SA, Serebraykova MV, Romanenko SA, Vorobieva NV, Kravatsky YV. DNA double-strand breaks coupled with PARP1 and HNRNPA2B1 binding sites flank coordinately expressed domains in human chromosomes. (doi: 10.1371/journal.pgen.1003429) PLoS Genet 9(4): e1003429, 2013

  • Druzhkova AS, Thalmann O, Trifonov VA, Leonard JA, Vorobieva NV, Ovodov ND, Graphodatsky AS, Wayne RK. Ancient DNA analysis affirms the canid from Altai as a primitive dog. (doi: 10.1371/journal.pone.0057754PLoS ONE 8(3): e57754, 2013

  • Макунин АИ, Трифонов ВА. Современные методы анализа добавочных хромосом. Цитология 55: 148–152, 2013

  • Кичигин ИГ, Трифонов ВА. Структура генома и определение пола чешуйчатых (Squamata). Цитология 55: 253-258, 2013

  • Косякова Н, Трифонов В, Романенко С, Мкртчан Х, Графодатский А, Лир Т. Многоцветный бэндинг хромосом мыши. Цитология 55: 259-260, 2013

2012

  • Biltueva L, Vorobieva N. Chromosome evolution in Eulipotyphla. Cytogen Genome Res 137: 154-164, 2012

  • Perelman PL, Beklemisheva VR, Yudkin DV, Petrina TN, Rozhnov VV, Nie W, Graphodatsky AS. Comparative chromosome painting in Carnivora and Pholidota. Cytogen Genome Res 137: 174-193, 2012

  • Trifonov VA, Musilova P, Kulemsina AI. Chromosome evolution in the Perissodactyla. Cytogen Genome Res 137: 208-217, 2012

  • Bucksch M, Ziegler M, Kosayakova N, Mulhatino MV, Llerena JC Jr, Morlot S, Fischer W, Polityko AD, Kulpanovich AI, Petersen MB, Belitz B, Trifonov V, Weise A, Liehr T, Hamid AB. A New multicolor fluorescence in situ hybridization probe set directed against human heterochromatin: HCM-FISH. J Histochem Cytochem 60: 530-536, 2012

  • Romanenko SA, Perelman PL, Trifonov VA, Graphodatsky AS. Chromosomal evolution of Rodentia. Heredity 108: 4-16, 2012

  • Xiaobo F, Liehr T, Voigt M, Kosyakova N, Mrasek K, Trifonov V, Karamysheva T, Rubtsov N, Weise A. Array painting in Hylobates lar characterizes in detail 44 evolutionary conserved breakpoints. Chromosome Res 20: 807, 2012

  • Pokorná M, Kratochvíl L, Giovannotti M, Trifonov VA, Ferguson-Smith MA, Caputo V, Olmo E, Rens W. A slow rate of chromosome evolution unites squamate reptiles. Chromosome Res 20: 808, 2012

2011

  • Cioffi MB, Sanchez A, Marchal JA, Kosyakova N, Liehr T, Trifonov V, Bertollo LAC. Cross-species chromosome painting tracks the independent origin of multiple sex chromosomes in two cofamiliar Erythrinidae fishes. BMC Evol Biol 11: 186, 2011

  • Cioffi MB, Sanchez A, Marchal JA, Kosyakova N, Liehr T, Trifonov V, Bertollo LAC. Whole chromosome painting reveals independent origin of sex chromosomes in closely related forms of a fish species. Genetica 139: 1065-1072, 2011

  • Escriba MC, Greciano PG, Mendez-Lago M, De Pablos B, Trifonov VA, Ferguson-Smith MA, Goday C, Villasante A. Molecular and cytological characterization of repetitive DNA sequences from the centromeric heterochromatin of Sciara coprophila. Chromosoma 120: 387-397, 2011

  • Pokorna M, Giovannotti M, Kratochvil L, Kasai F, Trifonov VA, O'Brien PCM, Caputo V, Olmo E, Ferguson-Smith MA, Rens W. Strong conservation of the bird Z chromosome in reptilian genomes is revealed by comparative painting despite 275 million years divergence. Chromosoma 120: 455-468, 2011

  • Duke Becker SE, Thomas R, Trifonov VA, Wayne RK, Graphodatsky AS, Breen M. Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes. Chromosome Res 19: 685-708, 2011

  • Beklemisheva VR, Romanenko SA, Biltueva LS, Trifonov VA, Vorobieva NV, Serdukova NA, Rubtsova NV, Brandler OV, O'Brien PCM, Yang F, Stanyon R, Ferguson-Smith MA, Graphodatsky AS. Reconstruction of karyotype evolution in core Glires. I. The genome homology revealed by comparative chromosome painting. Chromosome Res 19: 549-565, 2011

  • Kulemzina AI, Yang F, Trifonov VA, Ryder OA, Ferguson-Smith MA, Graphodatsky AS. Chromosome painting in Tragulidae facilitates the reconstruction of Ruminantia ancestral karyotype. Chromosome Res 19: 531-539, 2011

  • Kulemzina AI, Nie W, Trifonov VA, Staroselec Y, Vasenkov DA, Volleth M, Yang F, Graphodatsky AS. Comparative chromosome painting of four Siberian vespertilionidae species with aselliscus stoliczkanus and human probes. Cytogenet Genome Res 134: 200-205, 2011

  • Biltueva L, Vorobieva N, Perelman P, Trifonov V, Volobouev V, Panov V, Ilyashenko V, Onischenko S, O'Brien P, Yang F, Ferguson-Smith M, Graphodatsky A. Karyotype evolution of Eulipotyphla (Insectivora): The genome homology of seven Sorex species revealed by comparative chromosome painting and banding data. Cytogenet Genome Res 135: 51-64, 2011

  • Graphodatsky AS, Trifonov VA, Stanyon R. The genome diversity and karyotype evolution of mammals. Molecular Cytogenetics 4:22, 2011

  • Lamatsch DK, Trifonov V, Schories S, Epplen JT, Schmid M, Schartl M. Isolation of a cancer associated microchromosome in the sperm-dependent parthenogen Poecilia formosa. Cytogen Genome Res 135:135-142, 2011

  • Trifonov VA, Giovannotti M, O’Brien PCM, Wallduck M, Lovell F, Rens W, Parise-Maltempi PP, Caputo V, Ferguson-Smith MA. Chromosomal evolution in Gekkonidae. I. Chromosome painting between Gekko and Hemidactylus species reveals phylogenetic relationships within the group. Chromosome Res. 19: 843-855, 2011

  • Vorobieva NV, Sherbakov DY, Druzhkova AS, Stanyon R, Tsybankov AA, Vasiljev SK, Shunkov MV, Trifonov VA, Graphodatsky AS. Genotyping of Capreolus pygargus fossil DNA from Denisova Cave reveals phylogenetic relationships between ancient and modern populations. PLOS One 6(8): e24045, 2011

2010

  • Dementyeva PV, Trifonov VA, Kulemzina AI, Graphodatsky AS. Reconstruction of the putative Cervidae ancestral karyotype by chromosome painting of Siberian roe deer (Capreolus pygargus) with dromedary probes. Cytogenet Genome Res 128: 228-235, 2010

  • Giovannotti M, Caputo V, O’Brien PCM, Lovell FL, Trifonov V, Cerioni PN, Olmo E, Ferguson-Smith MA, Rens W. Skinks (Reptilia: Scincidae) have highly conserved karyotypes as revealed by chromosome painting. Cytogenet Genome Res 127: 224-231, 2010

  • Ktistaki E, Garefalaki A, Williams A, Andrews SR, Bell DM, Foster KE, Spilianakis CG, Flavell RA, Kosyakova N, Trifonov V, Liehr T, Kioussis D. CD8 locus nuclear dynamics during thymocyte development. J Immunol 184: 5686-5695, 2010

  • Trifonov VA, Kosyakova N, Romanenko SA, Stanyon R, Graphodatsky AS, Liehr T. New insights into the karyotypic evolution in muroid rodents revealed by multicolor banding applying murine probes. Chromosome Res 18: 265-275, 2010

  • Корниенко ОС, Трифонов ВА, Кулемзина АИ, Высоцкая ЛВ. Локализация теломерной ДНК на хромосомах саранчовых с разным типом мейотического синапсиса. Вестник НГУ. Серия: Биология, клиническая медицина 8: 111-117, 2010

  • Романенко СА, Лемская НА, Беклемишева ВР, Перельман ПЛ, Сердюкова НА, Графодатский АС. Сравнительная цитогенетика грызунов. Генетика 46: 1285-1289, 2010

  • Трифонов ВА, Дементьева ПВ, Беклемишева ВР, Юдкин ДВ, Воробьева НВ, Графодатский АС. Добавочные хромосомы, сегментные дупликации и эволюция. Генетика 46: 1234-1236, 2010

  • Кулемзина АИ, Билтуева ЛС, Трифонов ВА, Перельман ПЛ, Староселец ЯЮ, Беклемишева ВР, Воробьева НВ, Сердюкова НА, Графодатский АС. Сравнительная цитогенетика основных таксонов Laurasiatheria. Генетика 46: 1278-1284, 2010

2009

  • Kulemzina AI, Trifonov VA, Perelman PL, Rubtsova V, Volobuev V, Ferguson-Smith MA, Stanyon R, Yang F, Graphodatsky AS. Cross-species chromosome painting in Cetartiodactyla: reconstructing the karyotype evolution in key phylogenetic lineages. Chromosome Res 17: 419-436, 2009

  • Kukekova AV, Vorobieva NV, Beklemisheva VR, Johnson JL, Temnykh V, Yudkin DV, Trut LN, Andre C, Galibert F, Aguirre GD, Acland GM, Graphodatsky AS. Chromosomal mapping of canine-derived BAC clones to the red fox and American mink genomes. J Heredity 100: S42-S53, 2009

2008

  • Trifonov VA, Stanyon R, Nesterenko AI, Fu B, Perelman PL, O’Brien PCM, Stone G, Rubtsova NV, Houck ML, Robinson TJ, Ferguson-Smith MA, Dobigny G, Graphodatsky AS, Yang F. Multi-directional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla. Chromosome Res 16: 89-107, 2008

  • Graphodatsky AS, Perelman PL, Sokolovskaya NV, Beklemisheva VR, Serdukova NA, O’Brien PCM, Ferguson-Smith MA, Yang F. Phylogenomics of the dog and fox family (Canidae, Carnivora) revealed by chromosome painting. Chromosome Res 16: 129-143, 2008

  • Graphodatsky AS, Yang F, Dobigny G, Romanenko SA, Biltueva LS, Perelman PL, Beklemisheva VR, Alkalaeva EZ, Serdukova NA, Ferguson-Smith MA, Murphy WJ, Robinson TJ. Tracking genome organization in rodents by ZOO-FISH. Chromosome Res 16: 261-274, 2008

  • Henning F, Trifonov V, Ferguson-Smith MA, de Almeida-Toledo LF. Non-homologous sex chromosomes in two species of the the genus Eigenmannia (Teleostei: Gymnotiformes). Cytogenet Genome Res 121: 55-58, 2008

  • Trifonov V, Fluri S, Binkert F, Nandini A, Andersen J, Rodriguez L, Gross M, Kosyakova N, Mkrtchyan H, Ewers E, Reich D, Weise A, Liehr T. Complex rearranged small supernumerary marker chromosomes (sSMC), three new cases; evidence for an underestimated entity? Mol Cytogenet 1: 6, 2008

  • Liehr T, Mrasek K, Kosyakova N, Ogilvie CM, Vermeesch J, Trifonov V, Rubtsov N. Small supernumerary marker chromosomes (sSMC) in humans; are there B chromosomes hidden among them? Mol Cytogenet 1: 12, 2008

2007

  • Romanenko SA, Volobouev VT, Perelman PL, Lebedev VS, Serdukova NA, Trifonov VA, Biltueva LS, Nie W, O’Brien PCM, Bulatova NS, Ferguson-Smith MA, Yang F, Graphodatsky AS. Karyotype evolution and phylogenetic relationships of hamsters (Cricetidae, Muroidea, Rodentia) inferred from chromosomal painting and banding comparison. Chromosome Res 15: 283-297, 2007

  • Balmus G, Trifonov VA, Biltueva LS, O’Brien PCM, Alkalaeva ES, Fu B, Skidmore JA, Allen WR, Graphodatsky AS, Yang F, Ferguson-Smith MA. Cross-species chromosome painting among camel, cattle, pig and human: further insights into the putative Cetartiodactyla karyotype. Chromosome Res 15: 499-514, 2007

  • Sitnikova NA, Romanenko SA, O’Brien PCM, Perelman PL, Fu B, Rubtsova NV, Serdukova NA, Golenishchev FN, Trifonov VA, Ferguson-Smith MA, Yang F, Graphodatsky AS. Chromosomal evolution of Arvicolinae (Cricetidae, Rodentia). I. The genome homology of tundra vole, field vole, mouse and golden hamster revealed by comparative chromosome painting. Chromosome Res 15: 447-456, 2007

  • Grafodatskaya D, Rens W, Wallis MC, Trifonov V, O’Brien PCM, Clarke O, Graves JAM, Ferguson-Smith MA. Search for the sex-determining switch in monotremes: Mapping WT1, SF1, LHX1, LHX2, FGF9, WNT4, RSPO1 and GATA4 in platypus. Chromosome Res 15: 777-785, 2007

  • Yudkin DV, Trifonov VA, Kukekova AV, Vorobieva NV, Rubtsova NV, Yang F, Acland GM, Ferguson-Smith MA, Graphodatsky AS. Assignment of some sequences to Canidae autosomes and B-chromosomes by FISH and PCR-screening. Cytogenet Genome Res 116: 100-103, 2007

  • Rens W, O’Brien PCM, Grützner F, Clarke O, Graphodatskaya D, Tsend-Ayush E, Trifonov V, Skelton H, Wallis M, Johnston S, Veyrunes F, Graves JAM, Ferguson-Smith MA. The multiple sex chromosomes of platypus and echidna are not completely identical and several share homology with the avian Z. Genome Biology 8: R243, 2007

  • Ferguson-Smith MA, Trifonov V. Mammalian Karyotype Evolution. Nature Rev Genet 8: 950-962, 2007

  • Liehr T, Mrasek K, Hinreiner S, Reich D, Ewers E, Bartels I, Seidel J, Emmanuil N, Petesen M, Polityko A, Dufke A, Iourov I, Trifonov V, Vermeesch J, Weise A. Small supernumerary marker chromosomes (sSMC) in patients with a 45,X/46,X,+mar karyotype - 17 new cases and a review of the literature. Sex Dev 1: 353-362, 2007