Публикации и материалы конференций Лаборатории сравнительной геномики

2015

  • Romanenko SA, Biltueva LS, Serdyukova NA, Kulemzina AI, Beklemisheva VR, Gladkikh OL, Lemskaya NA, Interesova EA, Korentovich MA, Vorobieva NV, Graphodatsky AS, Trifonov VA. Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting. (doi: 10.1186/s13039-015-0194-8Mol Cytogenet 8: 90, 2015

  • Trifonov VA, Paoletti A, Caputo Barucchi V, Kalinina T, O’Brien PCM, Ferguson-Smith MA, Giovannotti M. Comparative chromosome painting and NOR distribution suggest a complex hybrid origin of triploid Lepidodactylus lugubris (Gekkonidae). (doi: 10.1371/journal.pone.0132380PLoS ONE 10(7): e0132380, 2015

  • Дружкова АС, Воробьева НВ, Трифонов ВА, Графодатский АС. Древняя ДНК: итоги и перспективы (к 30-летию начала исследований). Генетика 51: 627–643, 2015

  • Romanenko SA, Perelman PP, Trifonov VA, Serdyukova NA, Li T, Fu B, O’Brien PCM, Ng BL, Nie W, Liehr T, Stanyon R, Graphodatsky AS, Yang F. A first generation comparative chromosome map between guinea pig (Cavia porcellus) and humans. (doi: 10.1371/journal.pone.0127937PLoS ONE 10(5): e0127937, 2015

  • Weise A, Kosyakova N, Voigt M, Aust N, Mrasek K, Löhmer S, Rubtsov N, Karamysheva TV, Trifonov VA, Hardekopf D, Jančušková T, Pekova S, Wilhelm K, Liehr T, Fan X. Comprehensive analyses of white-handed gibbon chromosomes enables access to 92 evolutionary conserved breakpoints compared to the human genome. (doi: 10.1159/000381764Cytogenet Genome Res 145: 42-49, 2015

  • Pokorná MJ, Trifonov VA, Rens W, Ferguson-Smith MA, Kratochvíl L. Low rate of interchromosomal rearrangements during old radiation of gekkotan lizards (Squamata: Gekkota). (doi: 10.1007/s10577-015-9468-6Chromosome Res 23: 299-309, 2015

  • Avila F, Baily MP, Merriwether DA, Trifonov VA, Rubes J, Kutzler MA, Chowdhary R, Janečka J, Raudsepp T. A cytogenetic and comparative map of camelid chromosome 36 and the minute in alpacas. (doi: 10.1007/s10577-014-9463-3Chromosome Res 23: 237-251, 2015

  • Fan X, Supiwong W, Weise A, Mrasek K, Kosyakova N, Tanomtong A, Pinthong K, Trifonov VA, de Bello Cioffi M, Grothmann P, Liehr T, de Oliveira EHC. Comprehensive characterization of evolutionary conserved breakpoints in four New World Monkey karyotypes compared to Chlorocebus aethiops and Homo sapiens. (doi: 10.1016/j.heliyon.2015.e00042Heliyon 1(3): e00042, 2015

2014

  • Biltueva L, Kulemzina A, Vorobieva N, Perelman P, Kochneva M, Zhidenova A, Graphodatsky A. A new case of an inherited reciprocal translocation in cattle: rcp(13;26)(q24;q11). (doi: 10.1159/000368950Cytogenet Genome Res 144: 208-211, 2014

  • Makunin AI, Dementyeva PV, Graphodatsky AS, Volobujev VT, Kukekova AV, Trifonov VA. Genes on B chromosomes of vertebrates. (doi: 10.1186/s13039-014-0099-yMol Cytogenet 7: 99, 2014

  • Fan X, Sangpakdee W, Tanomtong A, Chaveerach A, Pinthong K, Pornnarong S, Supiwong W, Trifonov VA, Hovhannisyan GG, Aroutiounian RM, Liehr T, Weise A. Molecular cytogenetic analysis of Thai southern pig-tailed macaque (Macaca nemestrina) by multicolor banding. Proc Yerevan State University. Chem Biol 1: 46-50, 2014 

  • Fan X, Sangpakdee W, Tanomtong A, Chaveerach A, Pinthong K, Pornnarong S, Supiwong W, Trifonov V, Hovhannisyan G, Loth K, Hensel C, Liehr T, Weise A. Comprehensive molecular cytogenetic analysis of Barbary macaque (Macaca sylvanus).  Biol J Armenia 66(1): 98-102, 2014

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2013

  • Cioffi MB, Liehr T, Trifonov V, Molina WF, Bertollo LAC. Independent sex chromosome evolution in lower vertebrates: A molecular cytogenetic overview in the Erythrinidae fish family. (doi: 10.1159/000354039Cytogen Genome Res 141: 186-194, 2013

  • Kosyakova N, Hamid AB, Chaveerach A, Pinthong K, Siripiyasing P, Supiwong W, Romanenko S, Trifonov V, Fan X. Generation of multicolor banding probes for chromosomes of different species. (doi: 10.1186/1755-8166-6-6Mol Cytogen 6: 6, 2013

  • Parise-Maltempi PP, da Silva EL, Rens W, Dearden F, O'Brien PCM, Trifonov V, Ferguson-Smith MA. Comparative analysis of sex chromosomes in Leporinus species (Teleostei, Characiformes) using chromosome painting. (doi: 10.1186/1471-2156-14-60BMC Genetics 14: 60, 2013

  • Trifonov VA, Dementyeva PV, Larkin DM, O’Brien PCM, Perelman PL, Yang F, Ferguson-Smith MA, Graphodatsky AS. Transcription of a protein-coding gene on b-chromosomes of the siberian roe deer (Capreolus pygargus). (doi: 10.1186/1741-7007-11-90BMC Biology 11: 90, 2013

  • Leibiger C, Kosyakova N, Mkrtchyan H, Glei M, Trifonov V, Liehr T. First molecular cytogenetic high resolution characterization of the NIH 3T3 cell line by murine multicolor banding. (doi: 10.1369/0022155413476868J Histochem Cytochem 61: 306-312, 2013

  • Tchurikov NA, Kretova OV, Fedoseeva DM, Sosin DV, Grachev SA, Serebraykova MV, Romanenko SA, Vorobieva NV, Kravatsky YV. DNA double-strand breaks coupled with PARP1 and HNRNPA2B1 binding sites flank coordinately expressed domains in human chromosomes. (doi: 10.1371/journal.pgen.1003429) PLoS Genet 9(4): e1003429, 2013

  • Druzhkova AS, Thalmann O, Trifonov VA, Leonard JA, Vorobieva NV, Ovodov ND, Graphodatsky AS, Wayne RK. Ancient DNA analysis affirms the canid from Altai as a primitive dog. (doi: 10.1371/journal.pone.0057754PLoS ONE 8(3): e57754, 2013

  • Макунин АИ, Трифонов ВА. Современные методы анализа добавочных хромосом. Цитология 55: 148–152, 2013

  • Кичигин ИГ, Трифонов ВА. Структура генома и определение пола чешуйчатых (Squamata). Цитология 55: 253-258, 2013

  • Косякова Н, Трифонов В, Романенко С, Мкртчан Х, Графодатский А, Лир Т. Многоцветный бэндинг хромосом мыши. Цитология 55: 259-260, 2013

2012

  • Biltueva L, Vorobieva N. Chromosome evolution in Eulipotyphla. Cytogen Genome Res 137: 154-164, 2012

  • Perelman PL, Beklemisheva VR, Yudkin DV, Petrina TN, Rozhnov VV, Nie W, Graphodatsky AS. Comparative chromosome painting in Carnivora and Pholidota. Cytogen Genome Res 137: 174-193, 2012

  • Trifonov VA, Musilova P, Kulemsina AI. Chromosome evolution in the Perissodactyla. Cytogen Genome Res 137: 208-217, 2012

  • Bucksch M, Ziegler M, Kosayakova N, Mulhatino MV, Llerena JC Jr, Morlot S, Fischer W, Polityko AD, Kulpanovich AI, Petersen MB, Belitz B, Trifonov V, Weise A, Liehr T, Hamid AB. A New multicolor fluorescence in situ hybridization probe set directed against human heterochromatin: HCM-FISH. J Histochem Cytochem 60: 530-536, 2012

  • Romanenko SA, Perelman PL, Trifonov VA, Graphodatsky AS. Chromosomal evolution of Rodentia. Heredity 108: 4-16, 2012

  • Xiaobo F, Liehr T, Voigt M, Kosyakova N, Mrasek K, Trifonov V, Karamysheva T, Rubtsov N, Weise A. Array painting in Hylobates lar characterizes in detail 44 evolutionary conserved breakpoints. Chromosome Res 20: 807, 2012

  • Pokorná M, Kratochvíl L, Giovannotti M, Trifonov VA, Ferguson-Smith MA, Caputo V, Olmo E, Rens W. A slow rate of chromosome evolution unites squamate reptiles. Chromosome Res 20: 808, 2012

2011

  • Cioffi MB, Sanchez A, Marchal JA, Kosyakova N, Liehr T, Trifonov V, Bertollo LAC. Cross-species chromosome painting tracks the independent origin of multiple sex chromosomes in two cofamiliar Erythrinidae fishes. BMC Evol Biol 11: 186, 2011

  • Cioffi MB, Sanchez A, Marchal JA, Kosyakova N, Liehr T, Trifonov V, Bertollo LAC. Whole chromosome painting reveals independent origin of sex chromosomes in closely related forms of a fish species. Genetica 139: 1065-1072, 2011

  • Escriba MC, Greciano PG, Mendez-Lago M, De Pablos B, Trifonov VA, Ferguson-Smith MA, Goday C, Villasante A. Molecular and cytological characterization of repetitive DNA sequences from the centromeric heterochromatin of Sciara coprophila. Chromosoma 120: 387-397, 2011

  • Pokorna M, Giovannotti M, Kratochvil L, Kasai F, Trifonov VA, O'Brien PCM, Caputo V, Olmo E, Ferguson-Smith MA, Rens W. Strong conservation of the bird Z chromosome in reptilian genomes is revealed by comparative painting despite 275 million years divergence. Chromosoma 120: 455-468, 2011

  • Duke Becker SE, Thomas R, Trifonov VA, Wayne RK, Graphodatsky AS, Breen M. Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes. Chromosome Res 19: 685-708, 2011

  • Beklemisheva VR, Romanenko SA, Biltueva LS, Trifonov VA, Vorobieva NV, Serdukova NA, Rubtsova NV, Brandler OV, O'Brien PCM, Yang F, Stanyon R, Ferguson-Smith MA, Graphodatsky AS. Reconstruction of karyotype evolution in core Glires. I. The genome homology revealed by comparative chromosome painting. Chromosome Res 19: 549-565, 2011

  • Kulemzina AI, Yang F, Trifonov VA, Ryder OA, Ferguson-Smith MA, Graphodatsky AS. Chromosome painting in Tragulidae facilitates the reconstruction of Ruminantia ancestral karyotype. Chromosome Res 19: 531-539, 2011

  • Kulemzina AI, Nie W, Trifonov VA, Staroselec Y, Vasenkov DA, Volleth M, Yang F, Graphodatsky AS. Comparative chromosome painting of four Siberian vespertilionidae species with aselliscus stoliczkanus and human probes. Cytogenet Genome Res 134: 200-205, 2011

  • Biltueva L, Vorobieva N, Perelman P, Trifonov V, Volobouev V, Panov V, Ilyashenko V, Onischenko S, O'Brien P, Yang F, Ferguson-Smith M, Graphodatsky A. Karyotype evolution of Eulipotyphla (Insectivora): The genome homology of seven Sorex species revealed by comparative chromosome painting and banding data. Cytogenet Genome Res 135: 51-64, 2011

  • Graphodatsky AS, Trifonov VA, Stanyon R. The genome diversity and karyotype evolution of mammals. Molecular Cytogenetics 4:22, 2011

  • Lamatsch DK, Trifonov V, Schories S, Epplen JT, Schmid M, Schartl M. Isolation of a cancer associated microchromosome in the sperm-dependent parthenogen Poecilia formosa. Cytogen Genome Res 135:135-142, 2011

  • Trifonov VA, Giovannotti M, O’Brien PCM, Wallduck M, Lovell F, Rens W, Parise-Maltempi PP, Caputo V, Ferguson-Smith MA. Chromosomal evolution in Gekkonidae. I. Chromosome painting between Gekko and Hemidactylus species reveals phylogenetic relationships within the group. Chromosome Res. 19: 843-855, 2011

  • Vorobieva NV, Sherbakov DY, Druzhkova AS, Stanyon R, Tsybankov AA, Vasiljev SK, Shunkov MV, Trifonov VA, Graphodatsky AS. Genotyping of Capreolus pygargus fossil DNA from Denisova Cave reveals phylogenetic relationships between ancient and modern populations. PLOS One 6(8): e24045, 2011

2010

  • Dementyeva PV, Trifonov VA, Kulemzina AI, Graphodatsky AS. Reconstruction of the putative Cervidae ancestral karyotype by chromosome painting of Siberian roe deer (Capreolus pygargus) with dromedary probes. Cytogenet Genome Res 128: 228-235, 2010

  • Giovannotti M, Caputo V, O’Brien PCM, Lovell FL, Trifonov V, Cerioni PN, Olmo E, Ferguson-Smith MA, Rens W. Skinks (Reptilia: Scincidae) have highly conserved karyotypes as revealed by chromosome painting. Cytogenet Genome Res 127: 224-231, 2010

  • Ktistaki E, Garefalaki A, Williams A, Andrews SR, Bell DM, Foster KE, Spilianakis CG, Flavell RA, Kosyakova N, Trifonov V, Liehr T, Kioussis D. CD8 locus nuclear dynamics during thymocyte development. J Immunol 184: 5686-5695, 2010

  • Trifonov VA, Kosyakova N, Romanenko SA, Stanyon R, Graphodatsky AS, Liehr T. New insights into the karyotypic evolution in muroid rodents revealed by multicolor banding applying murine probes. Chromosome Res 18: 265-275, 2010

  • Корниенко ОС, Трифонов ВА, Кулемзина АИ, Высоцкая ЛВ. Локализация теломерной ДНК на хромосомах саранчовых с разным типом мейотического синапсиса. Вестник НГУ. Серия: Биология, клиническая медицина 8: 111-117, 2010

  • Романенко СА, Лемская НА, Беклемишева ВР, Перельман ПЛ, Сердюкова НА, Графодатский АС. Сравнительная цитогенетика грызунов. Генетика 46: 1285-1289, 2010

  • Трифонов ВА, Дементьева ПВ, Беклемишева ВР, Юдкин ДВ, Воробьева НВ, Графодатский АС. Добавочные хромосомы, сегментные дупликации и эволюция. Генетика 46: 1234-1236, 2010

  • Кулемзина АИ, Билтуева ЛС, Трифонов ВА, Перельман ПЛ, Староселец ЯЮ, Беклемишева ВР, Воробьева НВ, Сердюкова НА, Графодатский АС. Сравнительная цитогенетика основных таксонов Laurasiatheria. Генетика 46: 1278-1284, 2010

2009

  • Kulemzina AI, Trifonov VA, Perelman PL, Rubtsova V, Volobuev V, Ferguson-Smith MA, Stanyon R, Yang F, Graphodatsky AS. Cross-species chromosome painting in Cetartiodactyla: reconstructing the karyotype evolution in key phylogenetic lineages. Chromosome Res 17: 419-436, 2009

  • Kukekova AV, Vorobieva NV, Beklemisheva VR, Johnson JL, Temnykh V, Yudkin DV, Trut LN, Andre C, Galibert F, Aguirre GD, Acland GM, Graphodatsky AS. Chromosomal mapping of canine-derived BAC clones to the red fox and American mink genomes. J Heredity 100: S42-S53, 2009

2008

  • Trifonov VA, Stanyon R, Nesterenko AI, Fu B, Perelman PL, O’Brien PCM, Stone G, Rubtsova NV, Houck ML, Robinson TJ, Ferguson-Smith MA, Dobigny G, Graphodatsky AS, Yang F. Multi-directional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla. Chromosome Res 16: 89-107, 2008

  • Graphodatsky AS, Perelman PL, Sokolovskaya NV, Beklemisheva VR, Serdukova NA, O’Brien PCM, Ferguson-Smith MA, Yang F. Phylogenomics of the dog and fox family (Canidae, Carnivora) revealed by chromosome painting. Chromosome Res 16: 129-143, 2008

  • Graphodatsky AS, Yang F, Dobigny G, Romanenko SA, Biltueva LS, Perelman PL, Beklemisheva VR, Alkalaeva EZ, Serdukova NA, Ferguson-Smith MA, Murphy WJ, Robinson TJ. Tracking genome organization in rodents by ZOO-FISH. Chromosome Res 16: 261-274, 2008

  • Henning F, Trifonov V, Ferguson-Smith MA, de Almeida-Toledo LF. Non-homologous sex chromosomes in two species of the the genus Eigenmannia (Teleostei: Gymnotiformes). Cytogenet Genome Res 121: 55-58, 2008

  • Trifonov V, Fluri S, Binkert F, Nandini A, Andersen J, Rodriguez L, Gross M, Kosyakova N, Mkrtchyan H, Ewers E, Reich D, Weise A, Liehr T. Complex rearranged small supernumerary marker chromosomes (sSMC), three new cases; evidence for an underestimated entity? Mol Cytogenet 1: 6, 2008

  • Liehr T, Mrasek K, Kosyakova N, Ogilvie CM, Vermeesch J, Trifonov V, Rubtsov N. Small supernumerary marker chromosomes (sSMC) in humans; are there B chromosomes hidden among them? Mol Cytogenet 1: 12, 2008

2007

  • Romanenko SA, Volobouev VT, Perelman PL, Lebedev VS, Serdukova NA, Trifonov VA, Biltueva LS, Nie W, O’Brien PCM, Bulatova NS, Ferguson-Smith MA, Yang F, Graphodatsky AS. Karyotype evolution and phylogenetic relationships of hamsters (Cricetidae, Muroidea, Rodentia) inferred from chromosomal painting and banding comparison. Chromosome Res 15: 283-297, 2007

  • Balmus G, Trifonov VA, Biltueva LS, O’Brien PCM, Alkalaeva ES, Fu B, Skidmore JA, Allen WR, Graphodatsky AS, Yang F, Ferguson-Smith MA. Cross-species chromosome painting among camel, cattle, pig and human: further insights into the putative Cetartiodactyla karyotype. Chromosome Res 15: 499-514, 2007

  • Sitnikova NA, Romanenko SA, O’Brien PCM, Perelman PL, Fu B, Rubtsova NV, Serdukova NA, Golenishchev FN, Trifonov VA, Ferguson-Smith MA, Yang F, Graphodatsky AS. Chromosomal evolution of Arvicolinae (Cricetidae, Rodentia). I. The genome homology of tundra vole, field vole, mouse and golden hamster revealed by comparative chromosome painting. Chromosome Res 15: 447-456, 2007

  • Grafodatskaya D, Rens W, Wallis MC, Trifonov V, O’Brien PCM, Clarke O, Graves JAM, Ferguson-Smith MA. Search for the sex-determining switch in monotremes: Mapping WT1, SF1, LHX1, LHX2, FGF9, WNT4, RSPO1 and GATA4 in platypus. Chromosome Res 15: 777-785, 2007

  • Yudkin DV, Trifonov VA, Kukekova AV, Vorobieva NV, Rubtsova NV, Yang F, Acland GM, Ferguson-Smith MA, Graphodatsky AS. Assignment of some sequences to Canidae autosomes and B-chromosomes by FISH and PCR-screening. Cytogenet Genome Res 116: 100-103, 2007

  • Rens W, O’Brien PCM, Grützner F, Clarke O, Graphodatskaya D, Tsend-Ayush E, Trifonov V, Skelton H, Wallis M, Johnston S, Veyrunes F, Graves JAM, Ferguson-Smith MA. The multiple sex chromosomes of platypus and echidna are not completely identical and several share homology with the avian Z. Genome Biology 8: R243, 2007

  • Ferguson-Smith MA, Trifonov V. Mammalian Karyotype Evolution. Nature Rev Genet 8: 950-962, 2007

  • Liehr T, Mrasek K, Hinreiner S, Reich D, Ewers E, Bartels I, Seidel J, Emmanuil N, Petesen M, Polityko A, Dufke A, Iourov I, Trifonov V, Vermeesch J, Weise A. Small supernumerary marker chromosomes (sSMC) in patients with a 45,X/46,X,+mar karyotype - 17 new cases and a review of the literature. Sex Dev 1: 353-362, 2007