
Пиндюрин Алексей Валерьевич - Curriculum Vitae (13th of November 2021)

Group leader
e-mail:
a [dot] pindyurin

aleksey [dot] pindyurin

Work address
Laboratory of Cell Division
Institute of Molecular and Cellular Biology
Lavrentyev ave. 8/2
Novosibirsk
630090
Russia
Date and place of birth
31.08.1976 Novosibirsk, Russia
Education
1993-1998 |
Master degree in Biology Novosibirsk State University Pirogova str. 2 Novosibirsk 630090 Russia |
2003-2007 |
PhD degree in Biology Institute of Cytology and Genetics Lavrentyev ave. 10 Novosibirsk 630090 Russia |
Research experience
1998-2000 |
Graduate student Institute of Cytology and Genetics Novosibirsk, Russia Supervisor: Dr EM Baricheva (barich ![]() |
2000-2003 |
Graduate student
University of Geneva
Geneva, Switzerland
Supervisor: Prof V Pirrotta (pirrotta
![]() |
2003-2007 |
Research associate Institute of Cytology and Genetics Novosibirsk, Russia Supervisor: Prof IF Zhimulev (zhimulev ![]() |
2008-2013 |
Post-doc Netherlands Cancer Institute Amsterdam, the Netherlands Supervisor: Prof B van Steensel (b [dot] v [dot] steensel ![]() |
2013-2014 |
Post-doc Institute of Molecular and Cellular Biology Novosibirsk, Russia Supervisor: Dr SN Belyakin (belyakin ![]() |
2014-present |
Group leader
Institute of Molecular and Cellular Biology
Novosibirsk, Russia
|
Other experience (selected)
2004 1 month |
Visiting scientist Laboratory of Prof VA Gvozdev (gvozdev ![]() Institute of Molecular Genetics, Moscow, Russia |
2004-2005 5 months |
Visiting scientist Laboratory of Prof F Kafatos (f [dot] kafatos ![]() European Molecular Biology Laboratory, Heidelberg, Germany |
2005 2 weeks |
Visiting scientist Laboratory of Prof PG Georgiev (georgiev_p ![]() Institute of Gene Biology, Moscow, Russia |
2005 1 month |
Visiting scientist Laboratory of Dr B van Steensel (b [dot] v [dot] steensel ![]() Netherlands Cancer Institute, Amsterdam, the Netherlands |
2006 3 months |
Visiting scientist Laboratories of Prof F Kafatos (f [dot] kafatos ![]() Dr G Christophides (g [dot] christophides ![]() Division of Cell and Molecular Biology, Imperial College London, London, United Kingdom |
2007 2.5 months |
Visiting scientist Laboratory of Prof CP Verrijzer (c [dot] verrijzer ![]() Erasmus University Medical Centre, Rotterdam, The Netherlands |
Area of expertise
- Standard molecular cloning techniques. Southern blot analysis, Northern blot analysis, RT-qPCR analysis
- Production of recombinant proteins in bacteria, SDS-PAGE, Western blot analysis
- In vivo formaldehyde DNA-protein cross-linking and immunoprecipitation technique (ChIP). Identification of in vivo DNA targets of chromatin proteins using tethered Dam methyltransferase (DamID)
- Analysis of DNA-protein and protein-protein interactions (in vitro band shift assay, yeast one- and two-hybrid systems)
- DNA microarray hybridizations and subsequent data analysis
- Preparation of samples for Illumina high-throughput sequencing and the subsequent data analysis
- Thousands of Reporters Integrated in Parallel (TRIP), Massive Parallel Reporter Assay (MPRA) approaches
- “R”, a language and environment for statistical computing and graphics
- Drosophila and mammalian (including embryonic stem) cell culture handling. Production of lentiviruses
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Fly handling and crosses. Drosophila germline transformation
Area of interest
Regulation of gene expression, gene silencing, Polycomb and heterochromatin complexes, 3D architecture of chromatin
Awards and Grants
2021-2023 |
Executor Grant from the Ministry of Science and Higher Education of the Russian Federation 075-15-2021-1086 “Technological platform for the emergency establishment of tools for the prevention and therapy of viral infections on the example of SARS-CoV-2 neutralizing antibodies” |
2020-2021 |
Executor Stiftelsen för internationalisering av högre utbildning och forskning (STINT; the Swedish Foundation for International Cooperation in Research and Higher Education) grant IB2020-8638 “Thousands of Reporters Integrated in Parallel to explore epigenetic regulation by Polycomb group proteins” |
2019-2020 |
Supervisor Russian Science Foundation (RSF) grant 16-14-10288 (extension) “Multiplex analysis of contribution of chromatin position effect and transcriptional termination on gene expression in eukaryotes” рнф.рф/project/19-14-13031/ |
2016-2018 |
Supervisor Russian Science Foundation (RSF) grant 16-14-10288 “Multiplex analysis of contribution of chromatin position effect and transcriptional termination on gene expression in eukaryotes” рнф.рф/project/16-14-10288/ |
2016-2018 |
Supervisor Russian Foundation for Basic Research (RFBR) grant 16-04-01598 А “Characterization of functions of highly conservative CG17337 protein associated with replication fork progression inhibitor SUUR in Drosophila melanogaster” |
2016-2018 |
Executor Russian Foundation for Basic Research (RFBR) grant 16-04-01018 А “Studying the mechanisms of tissue- and stage-specific activity of transcription factor GAGA” |
2015-2017 |
Executor Russian Foundation for Basic Research (RFBR) grant 15-04-07653 А “Study of gut microbiota action on inflammation in experimental models of colitis and bacterial infection” |
2014-2016 |
Executor Mega-grant from the Government of the Russian Federation 14.Z50.31.0005 “The mechanisms of kinetochore-driven microtubule formation in Drosophila” |
2009 |
The European Academy (Academia Europaea) Prize for young Russian scientists |
2007 |
EMBO Short-Term Fellowship #ASTF 238-2007 |
2004 |
EMBO Short-Term Fellowship #ASTF 267-2004 |
Supervision of PhD students
2020-present |
Anastasia A Yushkova preliminary title of the PhD thesis: “Genome-wide analysis of Polycomb-mediated epigenetic regulation in cultured Drosophila and human cells” |
2017-present |
Anna E Letiagina preliminary title of the PhD thesis: “Multiplex analysis of the effects of the transcription termination process on gene activity in eukaryotes” |
2014-2019 |
Alyona V Razuvaeva PhD thesis title: “The role of the Patronin and Asp proteins in the mitotic spindle formation in Drosophila melanogaster” |
2014-2019 |
Julia V Popova PhD thesis title: “The role of Eb1, Mars, Non3, Mei-38 and Mast proteins in kinetochore-dependent formation of spindle microtubules in Drosophila melanogaster S2 cell culture” |
Participation in the organization of international conferences
2019-2021 |
Competition committee member “OpenBio” conference, the section “Molecular biology” Koltsovo, Novosibirsk region, Russia openbio.ru/en/ |
2015-2019 |
Organizing committee member “Chromosomes & Mitosis” mini-conference Novosibirsk, Russia www.mcb.nsc.ru/seminars-conference/mini-conference |
2015 |
Organizing committee member “Chromosome 2015” conference Novosibirsk, Russia chromosome2015.mcb.nsc.ru/ru/conference.php |
Participation in the editorial boards of scientific journals
2021-present |
Review Editor The "Genome Organization and Dynamics" section within "Frontiers in Molecular Biosciences" journal |
2020-present |
Topic co-editor Research Topic “The Role of High-Order Chromatin Organization in Gene Regulation” The Epigenomics and Epigenetics Section within "Frontiers in Genetics" and "Frontiers in Cell and Developmental Biology" journals |
Presentations (selected)
2018 International Conference “Chromosome 2018”, Novosibirsk, Russia, 20-24 August
2017 International mini-conference “Chromosomes and mitosis – 2017”, Novosibirsk, Russia, 8 December
2017 13th International conference on Drosophila heterochromatin, Cagliari, Italy, 4-10 June
2016 International mini-conference “Chromosomes and Mitosis – 2016”, Novosibirsk, Russia, 25 November
2015 The 8th Russian Congress of Young Biologists Symbiose – Russia 2015, Novosibirsk, Russia, 5-9 October
2014 Scientific School on molecular and cellular biology, Novosibirsk, Russia, 3-5 September
2014 International Conference (Living cells study (LCS) programme) “Chromatin meeting 2014”, Novosibirsk, Russia, 11 March
2012 10th Dutch Chromatin Meeting, Amsterdam, The Netherlands, 24 October
2012 International Conference “Chromosome 2012”, Novosibirsk, Russia, 2-7 September
List of publications
Publons (ResearcherID G-4167-2014)
Scopus ID 6504141292
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Katokhin AV, Pindyurin AV, Fedorova EV, Baricheva EM. Molecular genetic analysis of the Drosophila melanogaster Trithorax-like gene coding for the GAGA transcription factor.
Russian Journal of Genetics. 2001. 37(4): 467-474
DOI: 10.1023/A:1016694124303
https://link.springer.com/article/10.1023/A:1016694124303
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Kolesnikova TD, Andreeva EN, Pindyurin AV, Ananko NG, Belyakin SN, Shloma VV, Yurlova AA, Makunin IV, Pokholkova GV, Volkova EI, Zarutskaya EA, Kokoza EB, Semeshin VF, Belyaeva ES, Zhimulev IF. Contribution of the SuUR gene to the organization of epigenetically repressed regions of Drosophila melanogaster chromosomes.
Russian Journal of Genetics. 2006. 42(8): 831-844
DOI: 10.1134/S1022795406080011
https://link.springer.com/article/10.1134/S1022795406080011
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Pindyurin AV, Moorman C, de Wit E, Belyakin SN, Belyaeva ES, Christophides GK, Kafatos FC, van Steensel B, Zhimulev IF. SUUR joins separate subsets of PcG, HP1 and B-type lamin targets in Drosophila.
Journal of Cell Science. 2007. 120(14): 2344-2351
DOI: 10.1242/jcs.006007
http://jcs.biologists.org/content/120/14/2344.long
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Pindyurin AV, Boldyreva LV, Shloma VV, Kolesnikova TD, Pokholkova GV, Andreyeva EN, Kozhevnikova EN, Ivanoschuk IG, Zarutskaya EA, Demakov SA, Gorchakov AA, Belyaeva ES, Zhimulev IF. Interaction between the Drosophila heterochromatin proteins SUUR and HP1.
Journal of Cell Science. 2008. 121(10): 1693-1703
DOI: 10.1242/jcs.018655
http://jcs.biologists.org/content/121/10/1693.long
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Zhimulev IF, Belyaeva ES, Andreenkova NG, Andreeva EN, Belyakin SN, Boldyreva LV, Brusentsova IV, Volkova EI, Demakov SA, Demakova OV, Zarutskaya EA, Zykov IA, Kokoza EB, Kolesnikova TD, Komor UA, Koryakov DE, Makunin IV, Pindyurin AV, Pokholkova GV, Semeshin VF, Shloma VV, Yurlova AA. SuUR gene – a unique instrument for the study of structure and organization of Drosophila chromosomes and genome.
VOGiS Herald. 2008. 12(1/2): 127-148 (in Russian)
https://elibrary.ru/item.asp?id=12515811
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Andreyenkova NG, Kokoza EB, Semeshin VF, Belyaeva ES, Demakov SA, Pindyurin AV, Andreyeva EN, Volkova EI, Zhimulev IF. Localization and characteristics of DNA underreplication zone in the 75C region of intercalary heterochromatin in Drosophila melanogaster polytene chromosomes.
Chromosoma. 2009. 118(6): 747-761
DOI: 10.1007/s00412-009-0232-6
https://link.springer.com/article/10.1007%2Fs00412-009-0232-6
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Fedorova EV, Pindyurin AV, Baricheva EM. Maintenance of the patterns of expression of homeotic genes in the development of Drosophila melanogaster by proteins of the Polycomb, trithorax, and ETP Groups.
Russian Journal of Genetics. 2009. 45(10): 1145-1161
DOI: 10.1134/S1022795409100019
https://link.springer.com/article/10.1134/S1022795409100019
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Zhimulev IF, Belyaeva ES, Andreeva EN, Andreenkova NG, Babenko VN, Belyakin SN, Boldyreva LV, Brusentsova IV, Demakov SA, Demakova OV, Zykov IA, Kokoza EB, Kolesnikova TD, Maksimov DA, Makunin IV, Pindyurin AV, Semeshin VF, Khoroshko VA. Intercalary Heterochromatin in the Genome of Drosophila.
Russian Journal of Genetics. 2010. 46(10): 1240-1242
DOI: 10.1134/S1022795410100248
https://link.springer.com/article/10.1134/S1022795410100248
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Pindyurin AV, van Steensel B. Hox in space: Gene cluster regulation linked to folding of chromatin.
Nucleus. 2012. 3(2): 118-122
DOI: 10.4161/nucl.19159
http://www.tandfonline.com/doi/full/10.4161/nucl.19159
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Kozhevnikova EN, van der Knaap JA, Pindyurin AV, Ozgur Z, van Ijcken WF, Moshkin YM, Verrijzer CP. Metabolic enzyme IMPDH is also a transcription factor regulated by cellular state
Molecular Cell. 2012. 47(1): 133-139
DOI: 10.1016/j.molcel.2012.04.030
https://www.sciencedirect.com/science/article/pii/S1097276512003528
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Akhtar W*, de Jong J*, Pindyurin AV*, Pagie L, Meuleman W, de Ridder J, Berns A, Wessels LF, van Lohuizen M, van Steensel B. Chromatin position effects assayed by thousands of reporters integrated in parallel.
Cell. 2013. 154(4): 914-927
DOI: 10.1016/j.cell.2013.07.018 (*equal contribution)
https://www.sciencedirect.com/science/article/pii/S0092867413008891
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Akhtar W*, Pindyurin AV*, de Jong J, Pagie L, ten Hoeve J, Berns A, Wessels LF, van Steensel B, van Lohuizen M. Using TRIP for genome-wide position effect analysis in cultured cells.
Nature Protocols. 2014. 9(6): 1255-1281
DOI: 10.1038/nprot.2014.072 (*equal contribution)
https://www.nature.com/articles/nprot.2014.072
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Nordman JT, Kozhevnikova EN, Verrijzer CP, Pindyurin AV, Andreyeva EN, Shloma VV, Zhimulev IF, Orr-Weaver TL. DNA copy number control through inhibition of replication fork progression.
Cell Reports. 2014. 9(3): 841-849
DOI: 10.1016/j.celrep.2014.10.005
https://www.sciencedirect.com/science/article/pii/S2211124714008596
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Pokholkova GV, Koryakov DE, Pindyurin AV, Kozhevnikova EN, Belyakin SN, Andreyenkov OV, Belyaeva ES, Zhimulev IF. Tethering of SUUR and HP1 proteins results in delayed replication of euchromatic regions in Drosophila melanogaster polytene chromosomes.
Chromosoma. 2015. 124(2): 209-220
DOI: 10.1007/s00412-014-0491-8
https://link.springer.com/article/10.1007%2Fs00412-014-0491-8
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Pindyurin AV, de Jong J, Akhtar W. TRIP through the chromatin: A high throughput exploration of enhancer regulatory landscapes.
Genomics. 2015. 106(3): 171–177
DOI: 10.1016/j.ygeno.2015.06.009
http://www.sciencedirect.com/science/article/pii/S0888754315300136
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Pindyurin AV, Gatti M. Chromosomes in the taiga.
Chromosome Research. 2015. 23(4): 641-647
DOI: 10.1007/s10577-015-9498-0
https://link.springer.com/article/10.1007%2Fs10577-015-9498-0
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Pindyurin AV, Pagie L, Kozhevnikova EN, van Arensbergen J, van Steensel B. Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila.
Nucleic Acids Research. 2016. 44(12): 5646-5657
DOI: 10.1093/nar/gkw176
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw176
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Pavlova GA, Galimova JA, Popova JV, Munzarova AF, Razuvaeva AV, Alekseeva AL, Berkaeva MB, Pindyurin AV, Somma MP, Gatti M, Renda F. Factors governing the pattern of spindle microtubule regrowth after tubulin depolymerization.
Tsitologiya. 2016. 58(4): 299-303
http://www.tsitologiya.cytspb.rssi.ru/58_4/pavlova.pdf
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Andreyeva EN, Pechkovsky EV, Pindyurin AV, Gatti M. Pathways of spindle formation in Drosophila mitotic and meiotic cells.
Tsitologiya. 2016. 58(4): 295-298
http://www.tsitologiya.cytspb.rssi.ru/58_4/andreyeva.pdf
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Strunov A, Boldyreva LV, Pavlova GA, Pindyurin AV, Gatti M, Kiseleva E. A simple and effective method for ultrastructural analysis of mitosis in Drosophila S2 cells.
MethodsX. 2016. 3: 551-559
DOI: 10.1016/j.mex.2016.10.003
https://www.sciencedirect.com/science/article/pii/S221501611630036X
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Boldyreva LV, Goncharov FP, Demakova OV, Zykova TY, Levitsky VG, Kolesnikov NN, Pindyurin AV, Semeshin VF, Zhimulev IF. Protein and genetic composition of four chromatin types in Drosophila melanogaster cell lines.
Current Genomics. 2017. 18(2): 214-226
DOI: 10.2174/1389202917666160512164913
http://www.eurekaselect.com/142119
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Pindyurin AV. Genomic mapping of chromatin proteins by using Daminv modification of an FLP-dependent DamID approach.
Doklady Biochemistry and Biophysics. 2017. 472(1): 15-18
DOI: 10.1134/S1607672917010057
https://link.springer.com/article/10.1134%2FS1607672917010057
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Andreyeva EN, Bernardo TJ, Kolesnikova TD, Lu X, Yarinich LA, Bartholdy BA, Guo X, Posukh OV, Healton S, Willcockson MA, Pindyurin AV, Zhimulev IF, Skoultchi AI, Fyodorov DV. Regulatory functions and chromatin loading dynamics of linker histone H1 during endoreplication in Drosophila.
Genes and Development. 2017. 31(6): 603-616
DOI: 10.1101/gad.295717.116
http://genesdev.cshlp.org/content/31/6/603.long
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Ilyin AA, Ryazansky SS, Doronin SA, Olenkina OM, Mikhaleva EA, Yakushev EY, Abramov YA, Belyakin SN, Ivankin AV, Pindyurin AV, Gvozdev VA, Klenov MS, Shevelyov YY. Piwi interacts with chromatin at nuclear pores and promiscuously binds nuclear transcripts in Drosophila ovarian somatic cells.
Nucleic Acids Research. 2017. 45(13): 7666-7680
DOI: 10.1093/nar/gkx355
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx355
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Pindyurin AV. Genome-wide cell type-specific mapping of in vivo chromatin protein binding using an FLP-inducible DamID system in Drosophila.
Methods in Molecular Biology (Chapter in “Functional Genomics”, 3rd edition, eds. M Kaufmann, C Klinger, F Savelsbergh, 392 pages, Humana Press, New York, USA) 2017. 1654: 99-124
DOI: 10.1007/978-1-4939-7231-9_7
https://link.springer.com/protocol/10.1007%2F978-1-4939-7231-9_7
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Zakharenko LP, Petrovskii DV, Dranov IG, Fedorova SA, Yudin NS, Pindyurin AV, Moshkin YM. A link between phenotypic robustness and life expectancy in Drosophila melanogaster.
Vavilov Journal of Genetics and Breeding. 2017. 21(7): 816-824
DOI 10.18699/VJ17.301 (in Russian)
http://www.bionet.nsc.ru/vogis/download/14_Zakharenko.pdf
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Kozhevnikova EN, Leshchenko AE, Pindyurin AV. An inducible DamID system for profiling interactions of nuclear lamina protein component Lamin B1 with chromosomes in mouse cells.
Biochemistry (Mosc). 2018. 83(5): 586-594
DOI: 10.1134/S0006297918050115
https://link.springer.com/article/10.1134%2FS0006297918050115
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La Fortezza M, Grigolon G, Cosolo A, Pindyurin A, Breimann L, Blum H, van Steensel B, Classen A-K. DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis.
Epigenetics & Chromatin. 2018. 11: 27
DOI: 10.1186/s13072-018-0196-y
https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-018-0196-y
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Strunov A, Boldyreva LV, Andreyeva EN, Pavlova GA, Popova JV, Razuvaeva AV, Anders AF, Renda F, Pindyurin AV, Gatti M, Kiseleva E. Ultrastructural analysis of mitotic Drosophila S2 cells identifies distinctive microtubule and intracellular membrane behaviors.
BMC Biology. 2018. 16: 68
DOI: 10.1186/s12915-018-0528-1
https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-018-0528-1
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Ogienko AA, Yarinich LA, Fedorova EV, Lebedev MO, Andreyeva EN, Pindyurin AV, Baricheva EM. New slbo-Gal4 driver lines for the analysis of border cell migration during Drosophila oogenesis.
Chromosoma. 2018. 127(4): 475-487
DOI: 10.1007/s00412-018-0676-7
https://link.springer.com/article/10.1007%2Fs00412-018-0676-7
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Pindyurin AV, Ilyin AA, Ivankin AV, Tselebrovsky MV, Nenasheva VV, Mikhaleva EA, Pagie L, van Steensel B, Shevelyov YY. The large fraction of heterochromatin in Drosophila neurons is bound by both B-type lamin and HP1a.
Epigenetics & Chromatin. 2018. 11(1): 65
DOI: 10.1186/s13072-018-0235-8
https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-018-0235-8
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Andreyeva EN, Ogienko AA, Dubatolova TD, Oshchepkova AL, Kozhevnikova EN, Ivankin AV, Pavlova GA, Kopyl SA, Pindyurin AV. A toolset to study functions of Cytosolic non-specific dipeptidase 2 (CNDP2) using Drosophila as a model organism.
BMC Genetics. 2019. 20(Suppl 1): 31
DOI: 10.1186/s12863-019-0726-z
https://bmcgenet.biomedcentral.com/articles/10.1186/s12863-019-0726-z
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Andreyeva EN, Ogienko AA, Yushkova AA, Popova JV, Pavlova GA, Kozhevnikova EN, Ivankin AV, Gatti M, Pindyurin AV. Non3 is an essential Drosophila gene required for proper nucleolus assembly.
Vavilov Journal of Genetics and Breeding. 2019. 23(2): 190-198
DOI: 10.18699/VJ19.481
https://vavilov.elpub.ru/jour/article/view/1935/1199
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Lebedev MO, Yarinich LA, Ivankin AV, Pindyurin AV. Generation of barcoded plasmid libraries for massively parallel analysis of chromatin position effects.
Vavilov Journal of Genetics and Breeding. 2019. 23(2): 203-211
DOI: 10.18699/VJ19.483
https://vavilov.elpub.ru/jour/article/view/1937/1201
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Omelina ES, Pindyurin AV. Optogenetic regulation of endogenous gene transcription in mammals.
Vavilov Journal of Genetics and Breeding. 2019. 23(2): 219-225
DOI: 10.18699/VJ19.485
https://vavilov.elpub.ru/jour/article/view/1939/1203
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Gisler S, Gonçalves JP, Akhtar W, de Jong J, Pindyurin AV, Wessels LFA, van Lohuizen M. Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency.
Nature Communications. 2019. 10: 1598
DOI: 10.1038/s41467-019-09551-w
https://www.nature.com/articles/s41467-019-09551-w
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Pavlova GA, Razuvaeva AV, Popova JV, Andreyeva EN, Yarinich LA, Lebedev MO, Pellacani C, Bonaccorsi S, Somma MP, Gatti M, Pindyurin AV. The role of Patronin in Drosophila mitosis.
BMC Molecular and Cell Biology. 2019. 20(Suppl 1): 7
DOI: 10.1186/s12860-019-0189-0
https://bmcmolcellbiol.biomedcentral.com/articles/10.1186/s12860-019-0189-0
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Omelina ES, Ivankin AV, Letiagina AE, Pindyurin AV. Optimized PCR conditions minimizing the formation of chimeric DNA molecules from MPRA plasmid libraries.
BMC Genomics. 2019. 20(Suppl 7): 536
DOI: 10.1186/s12864-019-5847-2
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5847-2
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Pavlova GA, Popova JV, Andreyeva EN, Yarinich LA, Lebedev MO, Razuvaeva AV, Dubatolova TD, Oshchepkova AL, Pellacani C, Somma MP, Pindyurin AV, Gatti M. RNAi-mediated depletion of the NSL complex subunits leads to abnormal chromosome segregation and defective centrosome duplication in Drosophila mitosis.
PLoS Genetics. 2019. 15(9): e1008371
DOI: 10.1371/journal.pgen.1008371
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1008371
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Borisova MA, Snytnikova OA, Litvinova EA, Achasova KM, Babochkina TI, Pindyurin AV, Tsentalovich YuP, Kozhevnikova EN. Fucose ameliorates tryptophan metabolism and behavioral abnormalities in a mouse model of chronic colitis.
Nutrients. 2020. 12(2): 445
DOI: 10.3390/nu12020445
https://www.mdpi.com/2072-6643/12/2/445
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Somma MP, Andreyeva EN, Pavlova GA, Pellacani C, Bucciarelli E, Popova JV, Bonaccorsi S, Pindyurin AV, Gatti M. Moonlighting in mitosis: Analysis of the mitotic functions of transcription and splicing factors.
Cells. 2020. 9: 1554
DOI: 10.3390/cells9061554
https://www.mdpi.com/2073-4409/9/6/1554
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Ogienko AA, Yarinich LA, Fedorova EV, Dorogova NV, Bayborodin SI, Baricheva EM, Pindyurin AV. GAGA regulates border cell migration in Drosophila.
International Journal of Molecular Sciences. 2020. 21: 7468
DOI: 10.3390/ijms21207468
https://www.mdpi.com/1422-0067/21/20/7468
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Ogienko AA, Andreyeva EN, Omelina ES, Oshchepkova AL, Pindyurin AV. Molecular and cytological analysis of widely-used Gal4 driver lines for Drosophila neurobiology.
BMC Genetics. 2020. 21(Suppl 1): 96
DOI: 10.1186/s12863-020-00895-7
https://bmcgenet.biomedcentral.com/articles/10.1186/s12863-020-00895-7
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Dolskiy AA, Yarushkin AA, Grishchenko IV, Lemskaya NA, Pindyurin AV, Boldyreva LV, Pustylnyak VO, Yudkin DV. miRNA expression and interaction with the 3′UTR of FMR1 in FRAXopathy pathogenesis.
Non-coding RNA Research. 2021. 6(1): 1-7
DOI: 10.1016/j.ncrna.2020.11.006
https://www.sciencedirect.com/science/article/pii/S2468054020300743
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Boldyreva LV, Yarinich LA, Kozhevnikova EN, Ivankin AV, Lebedev MO, Pindyurin AV. Fine gene expression regulation by minor sequence variations downstream of the polyadenylation signal.
Molecular Biology Reports. 2021. 48(2): 1539-1547
DOI: 10.1007/s11033-021-06160-z
https://link.springer.com/article/10.1007%2Fs11033-021-06160-z
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Letiagina AE, Omelina ES, Ivankin AV, Pindyurin AV. MPRAdecoder: Processing of the raw MPRA data with a priori unknown sequences of the region of interest and associated barcodes.
Frontiers in Genetics. 2021. 12: 618189
DOI: 10.3389/fgene.2021.618189
https://www.frontiersin.org/articles/10.3389/fgene.2021.618189/full
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Boldyreva LV, Andreyeva EN, Pindyurin AV. Gene position effect: Role of the local environment in regulation of gene activity.
Molecular Biology. 2022
Accepted for publication